RNA id: TU2387982


Basic Information

Item Value
RNA id TU2387982
length 1337
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G2087829
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46900603 ~ 46903258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAttaatattcacccagttcaatttaacagcgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacaggtttaggttactgtcattcatattccattcacccacttcaatgtaacagtgacaggtttaggttactgtcattcatattcacccagttcaatgtaacagtgacaggtttaggttactgtcattcatattccattcacccacttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgacaggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgacaggtttaggttactgtcattcatatccacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattccattcacccagttcaatgtaacagtgacaggtttaggttactgtcattcatattccattcacccagttcaatgtaacagtgacaggtttaggttactgtcattcatattcacccagctcactgtaacagtgataggtttaggttactgtcattcatattccattcacccagttcaatgtaacagtgacaggtttaggttactgtcattcatatccacccagttcaatgtaacagtgataggtttaggttactgtcattcatattccattcacccagttcaatgtaacagtgacaggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggtcactgtcattcatattcacccagttcaatgtaacagtgataggtttaggtcactgtcattcatattcacccagttcaatgtaacagtgataggtttagGtcactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagcaataggtttaggttactacatgatactagaatgttcccctgtacccatcatgaggttgataCAACCTAGACTATGactgaaagtttacaatgtaggtgcacacaggcCGAGAGGCAAgtgtgagtaatcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387958 lncRNA upstream 52035 46842055 ~ 46848568 (+) True G2087812
TU2387943 lncRNA upstream 80371 46817093 ~ 46820232 (+) True G2087799
TU2387787 lncRNA upstream 138610 46758987 ~ 46761993 (+) False fndc3a
TU2387991 lncRNA downstream 12109 46915367 ~ 46915941 (+) True G2087833
TU2387994 lncRNA downstream 14639 46917897 ~ 46918268 (+) True G2087836
TU2387865 lncRNA downstream 33555 46936813 ~ 46937184 (+) True G2087727
TU2387996 lncRNA downstream 39724 46942982 ~ 46943760 (+) True G2087838
TU2387863 lncRNA downstream 117310 47020568 ~ 47022349 (+) False prcp
XM_036965301.1 mRNA upstream 2681 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA upstream 2681 46821928 ~ 46897922 (+) True zgc:153184
XM_021588563.2 mRNA upstream 117572 46774412 ~ 46783031 (+) True mlnr
XM_036965068.1 mRNA upstream 142286 46692419 ~ 46758317 (+) False fndc3a
XM_036965302.1 mRNA downstream 3592 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA downstream 11530 46914788 ~ 46930260 (+) True LOC110508118
XM_036965306.1 mRNA downstream 43612 46946870 ~ 46959779 (+) True guca1c
XM_021588558.2 mRNA downstream 68029 46971287 ~ 46972031 (+) True LOC110508116
XM_036965304.1 mRNA downstream 74845 46978103 ~ 47003404 (+) False rab30
TU2387647 other upstream 403716 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 403716 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 403716 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 403716 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 576909 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 123861 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 133784 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 622182 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 629164 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 950848 47854106 ~ 47864829 (+) True G2088870

Expression Profile