RNA id: TU2387865


Basic Information

Item Value
RNA id TU2387865
length 295
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G2087727
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46936813 ~ 46937184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTCTAACGGGATTCCGATAGGATTCTAATAGGATTCCGATAGGATTCCGATCGGAGTCCAATAGGATTCTAATAGGATTCTAATAGGAGTCCAATATGATTCTAATGGGATTCTGATAGGAGTCCAATAGGATTCTAATGCGATTCAGATAGGATTCTGATCGGAGTCCAATAGGATTCTAATGGGATTCTGATAGGAGTCCAATAGGATTCTAATGGGATCCCAATACGATTCCCATCGGAGTCCAATAGGATTCTAATAGGATTCTAATAGGAGTCCAATAGGATTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387994 lncRNA upstream 18545 46917897 ~ 46918268 (+) True G2087836
TU2387991 lncRNA upstream 20872 46915367 ~ 46915941 (+) True G2087833
TU2387982 lncRNA upstream 33555 46900603 ~ 46903258 (+) True G2087829
TU2387958 lncRNA upstream 88245 46842055 ~ 46848568 (+) True G2087812
TU2387943 lncRNA upstream 116581 46817093 ~ 46820232 (+) True G2087799
TU2387996 lncRNA downstream 5798 46942982 ~ 46943760 (+) True G2087838
TU2387863 lncRNA downstream 83384 47020568 ~ 47022349 (+) False prcp
TU2387871 lncRNA downstream 95083 47032267 ~ 47035518 (+) False prcp
TU2387869 lncRNA downstream 98406 47035590 ~ 47035929 (+) True G2087731
TU2388028 lncRNA downstream 102928 47040112 ~ 47040808 (+) False G2087869
XM_036965302.1 mRNA upstream 6553 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA upstream 6553 46914788 ~ 46930260 (+) True LOC110508118
XM_036965301.1 mRNA upstream 38891 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA upstream 38891 46821928 ~ 46897922 (+) True zgc:153184
XM_021588563.2 mRNA upstream 153782 46774412 ~ 46783031 (+) True mlnr
XM_036965306.1 mRNA downstream 9686 46946870 ~ 46959779 (+) True guca1c
XM_021588558.2 mRNA downstream 34103 46971287 ~ 46972031 (+) True LOC110508116
XM_036965304.1 mRNA downstream 40919 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA downstream 41143 46978327 ~ 47003404 (+) True rab30
XM_036965299.1 mRNA downstream 83317 47020501 ~ 47056921 (+) False prcp
TU2387647 other upstream 439926 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 439926 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 439926 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 439926 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 613119 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 89935 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 99858 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 588256 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 595238 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 916922 47854106 ~ 47864829 (+) True G2088870

Expression Profile