RNA id: TU2388044


Basic Information

Item Value
RNA id TU2388044
length 232
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2087881
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47064360 ~ 47064591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGgcacggtagcctagtggttagagcgttggactagtaaccggaagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgttgctctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgtgtaagaactgacttgcctagttaaataaaataaaggtaaaataaaaaaaatgttagtggtggctgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388028 lncRNA upstream 23552 47040112 ~ 47040808 (+) False G2087869
TU2388029 lncRNA upstream 23552 47040112 ~ 47040808 (+) False G2087869
TU2388031 lncRNA upstream 23552 47040112 ~ 47040808 (+) True G2087869
TU2387869 lncRNA upstream 28431 47035590 ~ 47035929 (+) True G2087731
TU2387871 lncRNA upstream 28842 47032267 ~ 47035518 (+) False prcp
TU2388729 lncRNA downstream 13152 47077743 ~ 47078258 (+) False G2088382
TU2388730 lncRNA downstream 13152 47077743 ~ 47078349 (+) True G2088382
TU2388731 lncRNA downstream 15031 47079622 ~ 47080068 (+) True G2088383
TU2388735 lncRNA downstream 15819 47080410 ~ 47080683 (+) True G2088386
TU2388736 lncRNA downstream 17789 47082380 ~ 47082589 (+) True G2088387
XM_036965299.1 mRNA upstream 7439 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 60956 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 60956 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 92329 46971287 ~ 46972031 (+) True LOC110508116
XM_036965306.1 mRNA upstream 104581 46946870 ~ 46959779 (+) True guca1c
XM_021593118.2 mRNA downstream 9939 47074530 ~ 47076721 (+) True LOC110513068
XM_036965048.1 mRNA downstream 417799 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 576006 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 576006 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1336662 48401253 ~ 48458439 (+) False nars2
TU2387877 other upstream 25957 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 35797 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 567473 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 460849 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 467831 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 789515 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 1123618 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 1123618 48188209 ~ 48191362 (+) False G2089020

Expression Profile