RNA id: TU2388730


Basic Information

Item Value
RNA id TU2388730
length 607
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2088382
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47077743 ~ 47078349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaggggttagggaaaatatgattttgaatgggaatcaattgtgtcTCTCCACAAGGTTAGTAAAACAAGACTGTCTGCTggtgtgtctgtttgtttgtgtgtaaggGTTGATTGTGTTGGTAGTCGGTGCAAATTATATCTATGGTGCATATGGTCTCTTAGGTGCAGATCTGTGCAGGGAGACGGCTAGGTTGAACTTTTCAGCAGTCTGGTGgcctggtggtagaagctgtctctgagcctgttggtccgagacATGACACTCTGACACCGCTTGCCAGATGGTAAACAGTCCTTGGCGATCTTTCAGTGTGGTGAATAAAAACAAATGTATAGATTTGGTTTTCTCATGTACTCTAATGCTCGTGTAAGTGAAAGTTAATTCACCCCTAATGAAAAAAAACGTTGTGTTACCCATGCCAGTCAATTTCAATatgtgttttgatttgatttaattcatTTAATTCATGCTCACAGCGGACAAGACTGACGACAAGACGCTACTTTAAAAACACCAGATATTACGTTCAATTAAAAGAGTCCAAGATTATAAGAATCCAGTTTTAAAGTCACATCTGATTATTAAACAGTGTCACAAAGCCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388044 lncRNA upstream 13152 47064360 ~ 47064591 (+) True G2087881
TU2388028 lncRNA upstream 36935 47040112 ~ 47040808 (+) False G2087869
TU2388029 lncRNA upstream 36935 47040112 ~ 47040808 (+) False G2087869
TU2388031 lncRNA upstream 36935 47040112 ~ 47040808 (+) True G2087869
TU2387869 lncRNA upstream 41814 47035590 ~ 47035929 (+) True G2087731
TU2388731 lncRNA downstream 1273 47079622 ~ 47080068 (+) True G2088383
TU2388735 lncRNA downstream 2061 47080410 ~ 47080683 (+) True G2088386
TU2388736 lncRNA downstream 4031 47082380 ~ 47082589 (+) True G2088387
TU2388835 lncRNA downstream 128275 47206624 ~ 47207253 (+) False G2088444
TU2388837 lncRNA downstream 128275 47206624 ~ 47207253 (+) True G2088444
XM_021593118.2 mRNA upstream 1022 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 20822 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 74339 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 74339 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 105712 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 404041 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 562248 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 562248 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1322904 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1382100 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 39340 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 49180 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 580856 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 447091 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 454073 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 775757 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 1109860 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 1109860 48188209 ~ 48191362 (+) False G2089020

Expression Profile