RNA id: TU2388736


Basic Information

Item Value
RNA id TU2388736
length 210
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G2088387
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47082380 ~ 47082589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactctaaccactaggctaccctgccgcctctacactctaaccactgggctaccctgccgcctctacactctaaccactgggctaccctgccgcctctacactctaaccactagactacctgcctcctccacactctaaccactagactacctacctcctctacactctaaccactaggctacctacctcctctacactctaaccactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388735 lncRNA upstream 1697 47080410 ~ 47080683 (+) True G2088386
TU2388731 lncRNA upstream 2312 47079622 ~ 47080068 (+) True G2088383
TU2388730 lncRNA upstream 4031 47077743 ~ 47078349 (+) True G2088382
TU2388729 lncRNA upstream 4122 47077743 ~ 47078258 (+) False G2088382
TU2388044 lncRNA upstream 17789 47064360 ~ 47064591 (+) True G2087881
TU2388835 lncRNA downstream 124035 47206624 ~ 47207253 (+) False G2088444
TU2388837 lncRNA downstream 124035 47206624 ~ 47207253 (+) True G2088444
TU2388842 lncRNA downstream 129833 47212422 ~ 47214531 (+) True G2088449
TU2388848 lncRNA downstream 138986 47221575 ~ 47223159 (+) True G2088455
TU2388853 lncRNA downstream 141699 47224288 ~ 47228255 (+) True G2088458
XM_021593118.2 mRNA upstream 5659 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 25459 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 78976 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 78976 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 110349 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 399801 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 558008 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 558008 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1318664 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1377860 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 43977 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 53817 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 585493 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 442851 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 449833 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 771517 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 1105620 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 1105620 48188209 ~ 48191362 (+) False G2089020

Expression Profile