RNA id: TU2388848


Basic Information

Item Value
RNA id TU2388848
length 265
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G2088455
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47221575 ~ 47223159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggttaaataaaggtgttctcaactagcccacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactggcctacctggttaaataaaggtgttctcaactagccttcctggttaaataaaggtgttctcaactggcctacctggttaaataaaggtgttctcaactggcctacctggttatataaaggtgttctcaactggcctacctggttaaataaaggtgttctcaactagcctacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388842 lncRNA upstream 7044 47212422 ~ 47214531 (+) True G2088449
TU2388835 lncRNA upstream 14322 47206624 ~ 47207253 (+) False G2088444
TU2388837 lncRNA upstream 14322 47206624 ~ 47207253 (+) True G2088444
TU2388736 lncRNA upstream 138986 47082380 ~ 47082589 (+) True G2088387
TU2388735 lncRNA upstream 140892 47080410 ~ 47080683 (+) True G2088386
TU2388853 lncRNA downstream 1129 47224288 ~ 47228255 (+) True G2088458
TU2388855 lncRNA downstream 7838 47230997 ~ 47233060 (+) True G2088460
TU2388989 lncRNA downstream 77951 47301110 ~ 47301322 (+) True G2088576
TU2388992 lncRNA downstream 81177 47304336 ~ 47304614 (+) True G2088579
TU2389006 lncRNA downstream 109308 47332467 ~ 47332693 (+) True G2088591
XM_021593118.2 mRNA upstream 144854 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 164654 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 218171 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 218171 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 249544 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 259231 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 417438 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 417438 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1178094 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1237290 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 183172 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 193012 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 724688 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 302281 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 309263 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 630947 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 965050 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 965050 48188209 ~ 48191362 (+) False G2089020

Expression Profile