RNA id: TU2388855


Basic Information

Item Value
RNA id TU2388855
length 2035
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G2088460
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47230997 ~ 47233060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACTGGAATGTTCTTACAATACAATTTAGAACCGAAGAGTTCTTAGAACACAGTTTAGAACTGAAATGTTCTTAGAACACAGTTTAGAACTGGAATGTTCTTAGAACACAGCTTAGAACTGGAATGTTCTTAGAACACAGTTTAGAACTAGAGAGTTCTTAGAACACAGTTTAGAACTGGAGAGTTCTTAGAACACAGTTTAGAACTGGAGAGTTCTATTGATCTGCCACAACATCATGCTTCCCTATGATCCTCCTTCACATCCCTATCTGGAGAGGAGACATACTTTAACAACAGCAGCTACTCCACAGCTTTGTGGCCAGAGCAAAGCCCTGTCCAAGATCTGAGAGGGTGTGTCCCAAACGACACTCTACTccatatatagtgtactacttttgaccagatccctatgggccctacatatagaatagggtgtgatttgggacgcAGAACTAGTATCAGGAAGGTATAGTGGAAGGTAGAAtccagatggagggagaaagatatGAGTTGCATTTCTTCCATTTGGTAAAAATGCAATAAAATGGTATTATACAGGAACATAATCTCAATTACTCTTGGAAGAGCGATTATAAATatgttattttctctctctcacaataaTATGGTATAAACTAGCACTAGAGGTGAGCAACGCCTTGAATACTAAATATACATTTATGAAATGTAAGGCTTGGAGCCTGGTTACAGTCAGTTCTCACTTACCTAATAGACATTTCATTGTGCGTACTATACTACGTTGCTGCTATTATCTACTGCAGCCCTTCTGCAGTAAACTCCCGACCTTATAAAAGACTTGGTGTGGAATAAACCTGTGGACCTAATAAAGGGTTTTCTCCTTGGTAACCTCGTTATCTCCGCACAGTGTTAAAACTGTGACCTCCACAAAGTAACAGTCATGAATCGTGTGGTGGCAACGACTTGAGGTGTGAGTGAGTTCTGAGTGACGAACGCagacagtagagataacactgaTACTAATGTTAAAAGAAAAGGTATGCCAGAGTCCATTCAGTAAAAAACTAAATGTAGTGAAAGAGTGCCCTTCTGCAGTAGATAATAGCAGCAGCGTAGTATAGTACGCACAATGAAATGTCTATTAGATAAGTGAGAACTGACTGTAACCAGGCTCCAAGCCTTACATTTCATAAATGTATATTTAGCATTCAAAGGCGTTGCTCACCTCTAGTGCTAGTTTATACCATAttattgtgagagagagaaaagaacatATTTCTAATCGCTCTTCCAAGAGTAATTGAGATTATGTTCCTGTATAATACCATTTTATTGCATTTTTACCAAATGGAAGAAATGCAACTCATATCTTTCTCCCTTCATCTGGATTCTAACTTTCACTATACCTTCCTGATACTAGTACTgcgtcccaaatcacaccctattctatatgtagggcccatagggatctggtcaaaagtagtacactatatatggAGTAGAGTGTCGTTTGGGACACACCCTCTCAGATCTTGGACAGGGCTTTGCTCTGGCCACAAAGCTGTGGCGTAGCTGCTGTTGTTAAAGTATGTCTCCTCTCCAGATAGGGATGTGGAGGAGGATCATAGGGAAGCATGATGTTGTGGCAGATCAATAGAACTCTCCAGTTCTAATCTGTGTTCTAAGAACTCTCCAGTTCTAAACTGTTTTCCAAGAACTCTCCAGTTCTAAACTGTGTTCTAAGAACATTCCAGTTCTAAGCTGTGTTCTGAGAACATTCCAGTTCTTAGCTGTGTTCTGAGAACATTCCAGTTCTAAGCTGTGTTCTAAGAACATTTCAGTTCTTAGCTGTGTTCTGAGAACATTTAAGTTCTAAGCTGTGTTCTAAGAACATTCCAGTTCTAAACTGTTTTCTAAGAACATTCCAGTTCTAAACTGTGTTCTAAGAACAATCTTTGTTCTAAGCTGTGTTCTAAGAACATTCCAGTTCTAAGCTGTGTTCTGAGAACATTCCAGTTCTTAGCTGTGTTCTGAGAATGCCTGTCTGGCCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388853 lncRNA upstream 2742 47224288 ~ 47228255 (+) True G2088458
TU2388848 lncRNA upstream 7838 47221575 ~ 47223159 (+) True G2088455
TU2388842 lncRNA upstream 16466 47212422 ~ 47214531 (+) True G2088449
TU2388835 lncRNA upstream 23744 47206624 ~ 47207253 (+) False G2088444
TU2388837 lncRNA upstream 23744 47206624 ~ 47207253 (+) True G2088444
TU2388989 lncRNA downstream 68050 47301110 ~ 47301322 (+) True G2088576
TU2388992 lncRNA downstream 71276 47304336 ~ 47304614 (+) True G2088579
TU2389006 lncRNA downstream 99407 47332467 ~ 47332693 (+) True G2088591
TU2389067 lncRNA downstream 163114 47396174 ~ 47398464 (+) False G2088648
TU2389070 lncRNA downstream 163664 47396724 ~ 47397376 (+) False G2088648
XM_021593118.2 mRNA upstream 154276 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 174076 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 227593 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 227593 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 258966 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 249330 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 407537 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 407537 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1168193 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1227389 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 192594 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 202434 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 734110 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 292380 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 299362 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 621046 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 955149 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 955149 48188209 ~ 48191362 (+) False G2089020

Expression Profile