RNA id: TU2388989


Basic Information

Item Value
RNA id TU2388989
length 213
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2088576
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47301110 ~ 47301322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctgttagtgagcatttctcctttgccaagttttgagggaatgtgcaattggcatgtggACGgcgggaatgtccaccagagctgttgccagataattgaatgttaatttctctaccataagctgcctccaacgtcattttagagaatttggcatttcATCCAACCGCAGGCCACGTActtgtatggcgttgtgtgggcaagcggtttgctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2388855 lncRNA upstream 68050 47230997 ~ 47233060 (+) True G2088460
TU2388853 lncRNA upstream 72855 47224288 ~ 47228255 (+) True G2088458
TU2388848 lncRNA upstream 77951 47221575 ~ 47223159 (+) True G2088455
TU2388842 lncRNA upstream 86579 47212422 ~ 47214531 (+) True G2088449
TU2388835 lncRNA upstream 93857 47206624 ~ 47207253 (+) False G2088444
TU2388992 lncRNA downstream 3014 47304336 ~ 47304614 (+) True G2088579
TU2389006 lncRNA downstream 31145 47332467 ~ 47332693 (+) True G2088591
TU2389067 lncRNA downstream 94852 47396174 ~ 47398464 (+) False G2088648
TU2389070 lncRNA downstream 95402 47396724 ~ 47397376 (+) False G2088648
TU2389068 lncRNA downstream 95752 47397074 ~ 47398003 (+) True G2088648
XM_021593118.2 mRNA upstream 224389 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 244189 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 297706 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 297706 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 329079 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 181068 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 339275 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 339275 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1099931 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1159127 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 262707 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 272547 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 804223 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 224118 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 231100 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 552784 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 886887 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 886887 48188209 ~ 48191362 (+) False G2089020

Expression Profile