RNA id: TU2389067


Basic Information

Item Value
RNA id TU2389067
length 383
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G2088648
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47396174 ~ 47398464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCCCCAATACGTTTTTCCTGCAGTCTacgatgttgtagtgttggtagGAGGAGAGGGTATACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACAGTATTGGTAGAAGGAGAGGGTATACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACAGTATTGGTAGGAGGAGAGGGTATACTATTGGACTGTATTGGTAGAAGGTATACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACTGTATTGGTAGAAGGAGAGGGTATACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACTGTATTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389006 lncRNA upstream 63481 47332467 ~ 47332693 (+) True G2088591
TU2388992 lncRNA upstream 91560 47304336 ~ 47304614 (+) True G2088579
TU2388989 lncRNA upstream 94852 47301110 ~ 47301322 (+) True G2088576
TU2388855 lncRNA upstream 163114 47230997 ~ 47233060 (+) True G2088460
TU2388853 lncRNA upstream 167919 47224288 ~ 47228255 (+) True G2088458
TU2389075 lncRNA downstream 1167 47399631 ~ 47401396 (+) False G2088653
TU2389076 lncRNA downstream 1167 47399631 ~ 47401396 (+) True G2088653
TU2389080 lncRNA downstream 4753 47403217 ~ 47403504 (+) True G2088656
TU2389091 lncRNA downstream 15047 47413511 ~ 47413831 (+) True G2088666
TU2389107 lncRNA downstream 30637 47429101 ~ 47429310 (+) True G2088682
XM_021593118.2 mRNA upstream 319453 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 339253 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 392770 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 392770 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 424143 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 83926 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 242133 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 242133 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1002789 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1061985 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 357771 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 367611 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 899287 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 126976 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 133958 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 455642 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 789745 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 789745 48188209 ~ 48191362 (+) False G2089020

Expression Profile