RNA id: TU2389068


Basic Information

Item Value
RNA id TU2389068
length 322
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G2088648
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47396174 ~ 47398464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTGTATTGGTAGGAGGAGAGGGTATGCTATTGGACAGTATTGGTAGAAGGTATACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACAGTATTGGTAGAAGGAGAGGGTATACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACTGTATTGGTAGAAGGTATACTATTGGACTGTATTAGTAGGAGGAGAGGGTATACTATTGGACAGTATTGGTAGAAGGTGTACTATTGGACTGTATTGGTAGGAGGAGAGGGTATACTATTGGACAGTATTGGTAGAAGGAGTGGGTATACTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389006 lncRNA upstream 64381 47332467 ~ 47332693 (+) True G2088591
TU2388992 lncRNA upstream 92460 47304336 ~ 47304614 (+) True G2088579
TU2388989 lncRNA upstream 95752 47301110 ~ 47301322 (+) True G2088576
TU2388855 lncRNA upstream 164014 47230997 ~ 47233060 (+) True G2088460
TU2388853 lncRNA upstream 168819 47224288 ~ 47228255 (+) True G2088458
TU2389075 lncRNA downstream 1628 47399631 ~ 47401396 (+) False G2088653
TU2389076 lncRNA downstream 1628 47399631 ~ 47401396 (+) True G2088653
TU2389080 lncRNA downstream 5214 47403217 ~ 47403504 (+) True G2088656
TU2389091 lncRNA downstream 15508 47413511 ~ 47413831 (+) True G2088666
TU2389107 lncRNA downstream 31098 47429101 ~ 47429310 (+) True G2088682
XM_021593118.2 mRNA upstream 320353 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 340153 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 393670 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 393670 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 425043 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 84387 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 242594 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 242594 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 1003250 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1062446 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 358671 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 368511 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 900187 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 127437 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 134419 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 456103 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 790206 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 790206 48188209 ~ 48191362 (+) False G2089020

Expression Profile