RNA id: TU2389091


Basic Information

Item Value
RNA id TU2389091
length 321
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G2088666
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47413511 ~ 47413831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccttgtcgagggcgcacccatctacagggtccgtagaattttggacatgcgtcctcggggccgtggtcaccagtacctcgtagattgggaggggtacggtcctgaggagaggagttgggttccctctcgggacgtgctggaccgtgcgctgatcgaggatttcctccgttgccgccaggtttcctcctcgagtgcgccaggaggcgctcggtgagtggggggggtactgtcatgtactgtcatgttgtgtcttgtctctgtcctttcccttcaccctgtctccctctgctggtcgttgttaggttaccttttctccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389080 lncRNA upstream 10007 47403217 ~ 47403504 (+) True G2088656
TU2389075 lncRNA upstream 12115 47399631 ~ 47401396 (+) False G2088653
TU2389076 lncRNA upstream 12115 47399631 ~ 47401396 (+) True G2088653
TU2389067 lncRNA upstream 15047 47396174 ~ 47398464 (+) False G2088648
TU2389107 lncRNA downstream 15270 47429101 ~ 47429310 (+) True G2088682
TU2389108 lncRNA downstream 16271 47430102 ~ 47430310 (+) True G2088683
TU2389115 lncRNA downstream 27969 47441800 ~ 47442310 (+) True G2088690
TU2389123 lncRNA downstream 34475 47448306 ~ 47448635 (+) True G2088697
TU2389129 lncRNA downstream 43347 47457178 ~ 47457510 (+) True G2088703
XM_021593118.2 mRNA upstream 336790 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 356590 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 410107 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 410107 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 441480 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 68559 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 226766 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 226766 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 987422 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1046618 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 375108 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 384948 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 916624 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 111609 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 118591 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 440275 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 774378 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 774378 48188209 ~ 48191362 (+) False G2089020

Expression Profile