RNA id: TU2389108


Basic Information

Item Value
RNA id TU2389108
length 209
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G2088683
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47430102 ~ 47430310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcccagctttgatgcacctgtactgacctcgccttttggatgatagcggggtgaacaggcagtggctcgggtggttgttgtccttgatgatctttttggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcacccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgagggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389107 lncRNA upstream 792 47429101 ~ 47429310 (+) True G2088682
TU2389091 lncRNA upstream 16271 47413511 ~ 47413831 (+) True G2088666
TU2389080 lncRNA upstream 26598 47403217 ~ 47403504 (+) True G2088656
TU2389075 lncRNA upstream 28706 47399631 ~ 47401396 (+) False G2088653
TU2389076 lncRNA upstream 28706 47399631 ~ 47401396 (+) True G2088653
TU2389115 lncRNA downstream 11490 47441800 ~ 47442310 (+) True G2088690
TU2389123 lncRNA downstream 17996 47448306 ~ 47448635 (+) True G2088697
TU2389129 lncRNA downstream 26868 47457178 ~ 47457510 (+) True G2088703
TU2389134 lncRNA downstream 31705 47462015 ~ 47462446 (+) True G2088707
TU2389136 lncRNA downstream 44114 47474424 ~ 47474790 (+) True G2088709
XM_021593118.2 mRNA upstream 353381 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 373181 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 426698 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 426698 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 458071 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 52080 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 210287 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 210287 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 970943 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 1030139 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 391699 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 401539 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 933215 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 95130 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 102112 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 423796 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 757899 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 757899 48188209 ~ 48191362 (+) False G2089020

Expression Profile