RNA id: TU2389134


Basic Information

Item Value
RNA id TU2389134
length 432
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2088707
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47462015 ~ 47462446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtcagtgaattgactagactggaggacgatggaatatactgtcagtgaattgactagactggaggacagtgggaatatactgtcagtgaattgactagactggaggacgatggaatatactgtcagtgaattgactagactggaggacagtgggaatatactgtcagtgaattgactagactggaggacgatggaatatactgtcagtgaattgactagactggaggagagtgggaatatactgtcagtgaattgactagactggaggacgatggaatatactgtcagtgaattgactagactggaggacagtgggaatatactgtcagtgaattgactagactggaggacagtgggaatatactgtcagtgaattgactagactggaggacagtgggaatatactgtcagtgaattgactagaatggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389129 lncRNA upstream 4505 47457178 ~ 47457510 (+) True G2088703
TU2389123 lncRNA upstream 13380 47448306 ~ 47448635 (+) True G2088697
TU2389115 lncRNA upstream 19705 47441800 ~ 47442310 (+) True G2088690
TU2389108 lncRNA upstream 31705 47430102 ~ 47430310 (+) True G2088683
TU2389107 lncRNA upstream 32705 47429101 ~ 47429310 (+) True G2088682
TU2389136 lncRNA downstream 11978 47474424 ~ 47474790 (+) True G2088709
TU2389141 lncRNA downstream 24368 47486814 ~ 47487849 (+) True G2088713
TU2389190 lncRNA downstream 118936 47581382 ~ 47635302 (+) True G2088745
TU2389199 lncRNA downstream 127478 47589924 ~ 47590226 (+) True G2088752
TU2389203 lncRNA downstream 131320 47593766 ~ 47658865 (+) True G2088753
XM_021593118.2 mRNA upstream 385294 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 405094 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 458611 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 458611 46978327 ~ 47003404 (+) True rab30
XM_021588558.2 mRNA upstream 489984 46971287 ~ 46972031 (+) True LOC110508116
XM_036965048.1 mRNA downstream 19944 47482390 ~ 47483034 (+) True LOC118944690
XM_036964775.1 mRNA downstream 178151 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 178151 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 938807 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 998003 48460449 ~ 48624448 (+) True gab2
TU2387877 other upstream 423612 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 433452 47027119 ~ 47028563 (+) True G2087865
TU2387649 other upstream 965128 46493922 ~ 46496887 (+) False G2087592
TU2389161 other downstream 62994 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 69976 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 391660 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 725763 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 725763 48188209 ~ 48191362 (+) False G2089020

Expression Profile