RNA id: TU2389161


Basic Information

Item Value
RNA id TU2389161
length 542
RNA type TUCP
GC content 0.45
exon number 2
gene id G2088729
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47525440 ~ 47528548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctgatgtcccttaagtcagctgttaaaaacacaaccctgatgtccctgatgtcccttaagtcagctgttaaaaccacaaccccgatgtccctgatgtcccttaagtcagctgttaaaaacacaaccctgatgtcccttatgtcagctgttaaaaccacaaccctgatgtcccttaagtcagctgttaaaaccacaaccctgatgtcccttaattCAGCTGTTAAAActacaaccctgatgtccctgatgtcccttaagtcagctgttaaaaacacatccctgatgtccctgatgtcccttaagtcagctgttaaaaacacaaccctgatgtccctgatgtcccttaagtcagctgttaaaaacacaaccctgatgtccctgatgtcccttaagtcagctgttaaaaccacaaccccgatgtccctgatgtcccttaagtcagctgttaaaaacacaaccctgatgtcccttatgtcagctgttaaaaccacaaccctgatgtcccttaagtcagctgttaaaaccacaaccctgatgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389141 lncRNA upstream 37591 47486814 ~ 47487849 (+) True G2088713
TU2389136 lncRNA upstream 50650 47474424 ~ 47474790 (+) True G2088709
TU2389134 lncRNA upstream 62994 47462015 ~ 47462446 (+) True G2088707
TU2389129 lncRNA upstream 67930 47457178 ~ 47457510 (+) True G2088703
TU2389123 lncRNA upstream 76805 47448306 ~ 47448635 (+) True G2088697
TU2389190 lncRNA downstream 52834 47581382 ~ 47635302 (+) True G2088745
TU2389199 lncRNA downstream 61376 47589924 ~ 47590226 (+) True G2088752
TU2389203 lncRNA downstream 65218 47593766 ~ 47658865 (+) True G2088753
TU2389212 lncRNA downstream 77986 47606534 ~ 47607094 (+) True G2088761
TU2389239 lncRNA downstream 123813 47652361 ~ 47655801 (+) True G2088781
XM_036965048.1 mRNA upstream 42406 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 448719 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 468519 47020501 ~ 47056921 (+) False prcp
XM_036965304.1 mRNA upstream 522036 46978103 ~ 47003404 (+) False rab30
XM_036965305.1 mRNA upstream 522036 46978327 ~ 47003404 (+) True rab30
XM_036964775.1 mRNA downstream 112049 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA downstream 112049 47640597 ~ 48319085 (+) True tenm4
XM_036965512.1 mRNA downstream 872705 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 931901 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 1104824 48633372 ~ 48774681 (+) False zmp:0000001236
TU2387877 other upstream 487037 47037042 ~ 47038403 (+) True prcp
TU2388024 other upstream 496877 47027119 ~ 47028563 (+) True G2087865
TU2387647 other upstream 1028553 46493922 ~ 46496887 (+) False G2087592
TU2389165 other downstream 3874 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 325558 47854106 ~ 47864829 (+) True G2088870
TU2389529 other downstream 659661 48188209 ~ 48191362 (+) False G2089020
TU2389530 other downstream 659661 48188209 ~ 48191362 (+) False G2089020
TU2389531 other downstream 659946 48188494 ~ 48191362 (+) True G2089020

Expression Profile