RNA id: TU2390910


Basic Information

Item Value
RNA id TU2390910
length 220
lncRNA type intronic
GC content 0.44
exon number 1
gene id G2090152
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49449745 ~ 49449964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagggggagggagacagaggcagTGTGAGTTTAGTTTCAGGAAGAACTACTTTCTACTTGAGGAGAAGTTgagagtagtgagagtagtgagagTAGATAACAAGCTAGTTTTTACAACGACTGGCTCCGGGCACATCTGGTCTCTGTAATCTATTATTTCAATCCCATCTGTGAGGGGGCTAAACGCTGTCTGGTTGAATAATTCTCCTAATATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390881 lncRNA upstream 4398 49371110 ~ 49445347 (+) True G2090123
TU2390870 lncRNA upstream 96096 49352547 ~ 49353649 (+) False G2090114
TU2390869 lncRNA upstream 96096 49352717 ~ 49353649 (+) True G2090114
TU2390867 lncRNA upstream 100132 49349267 ~ 49349613 (+) True G2090112
TU2390866 lncRNA upstream 100924 49348306 ~ 49348821 (+) True G2090111
TU2390913 lncRNA downstream 10522 49460486 ~ 49460699 (+) True G2090155
TU2390914 lncRNA downstream 14801 49464765 ~ 49465180 (+) True G2090156
TU2390919 lncRNA downstream 20871 49470835 ~ 49471117 (+) True G2090161
TU2390923 lncRNA downstream 22516 49472480 ~ 49474698 (+) False G2090162
TU2390924 lncRNA downstream 22516 49472480 ~ 49475238 (+) True G2090162
XR_005040013.1 mRNA upstream 125879 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 183110 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 263632 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 675064 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 1015919 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1015953 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 1017101 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 1017131 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 1215755 50665719 ~ 50850459 (+) True LOC110507254
TU2390858 other upstream 115562 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 126142 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 133519 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 390850 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 522453 48926975 ~ 48927292 (+) True G2089906
TU2391337 other downstream 335163 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 632099 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 902404 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1919800 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1919970 51369934 ~ 51370763 (+) True G2091895

Expression Profile