RNA id: TU2390930


Basic Information

Item Value
RNA id TU2390930
length 500
lncRNA type intronic
GC content 0.44
exon number 2
gene id G2090166
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49479809 ~ 49480360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgctagaggcgtcactacagaccctggttcgtttccaggttgtatcactaccggccatgattgggagtcccatagcggggtgcacatttggcccagtgtcgtcctggttagggtttggcccagGGTAAGCCATTGATGTAAATacaagttgttcttaactgacttgcctagttaaataaaggttcaatcaaaTTCATAATGTtgttgatgatccctgggttactgtatatagtctacTCAGTGGTTATGTGTTGTTGATCCCTgggctactgtatatagtctactCAGTGGTTATGtgttgatgatccctgggttactgtatatagtctacTCAGTGGTTATGtgttgatgatccctgggttactgtatatagtacTCAGTGGTTATGtgttgatgatccctgggttactgtatatagtctacTCAGTGGTTATGtgttgatgatccctgggttactgtatatagtctacTCAGTGGTTATGTGTTGTTTCCTTCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390924 lncRNA upstream 4571 49472480 ~ 49475238 (+) True G2090162
TU2390923 lncRNA upstream 5111 49472480 ~ 49474698 (+) False G2090162
TU2390919 lncRNA upstream 8692 49470835 ~ 49471117 (+) True G2090161
TU2390914 lncRNA upstream 14629 49464765 ~ 49465180 (+) True G2090156
TU2390913 lncRNA upstream 19110 49460486 ~ 49460699 (+) True G2090155
TU2390934 lncRNA downstream 5021 49485381 ~ 49486055 (+) True G2090170
TU2390968 lncRNA downstream 53333 49533693 ~ 49567533 (+) False G2090199
TU2390972 lncRNA downstream 65704 49546064 ~ 49558005 (+) True G2090202
TU2390969 lncRNA downstream 81512 49561872 ~ 49567533 (+) True G2090199
TU2391202 lncRNA downstream 116891 49597251 ~ 49597460 (+) True G2090398
XR_005040013.1 mRNA upstream 155943 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 213174 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 293696 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 705128 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 985523 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 985557 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 986705 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 986735 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 1185359 50665719 ~ 50850459 (+) True LOC110507254
TU2390858 other upstream 145626 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 156206 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 163583 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 420914 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 552517 48926975 ~ 48927292 (+) True G2089906
TU2391337 other downstream 304767 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 601703 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 872008 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1889404 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1889574 51369934 ~ 51370763 (+) True G2091895

Expression Profile