RNA id: TU2390972


Basic Information

Item Value
RNA id TU2390972
length 1832
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G2090202
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49546064 ~ 49558005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctgctgccttgacaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcaggaactaatgggaatccataataaaccccaggaagagtagctgctgtcttggcaggaactaatggggatccataacaaaccccaggaagagtagctgctgccttggtaacaggaactaatggggatccataataaaccccaggaagagtagctgctgccttgacaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggaatcataataaaacccaggaagagtagctgctggtttggcaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctgctgccttgacaggaactaatggggatccataataaaccccaggaagaatagctgctgccttggcaggaactaatggggatccataataaaccccaggaagagtagctgctggtttgcaggaactaatggggatccataataaaccccaggaagagtagcttatggtttggcaggaactaatggggatccataaaaaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctgctggtttggcaggaactaatggggatccataataaacccgaggaagagtagctgctggtttggcaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctactggtttgcaggaactaatggggatccataataaaccccaggaagagtagcttatggtttggcaggaactaatggggatccataaaaaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccacgtagagtagctgctggtttggcagcagctaatggggatccataataaaccccatgaagagtagctgctggtttggcaggaactaatggggatccataataaacccgaggaagagtagctgctggtttggcaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcaggaactaatggggatccacaataaaccccaggaagagtagctgctggtttggcagaagctaatggggatccataataaaccccaggaagagtagctgctggtttggcagcagctaatggggatccataataaaccccaggaagagtagctgctggcttggcagcagctaatggggatccataataaaccccaggaagagtagctgctggtttggcaggaactaatggggatccataataaaccccaggaagagtagctgctggtttggcaggaactaatggggatccataataaaccccagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390934 lncRNA upstream 60009 49485381 ~ 49486055 (+) True G2090170
TU2390930 lncRNA upstream 65704 49479809 ~ 49480360 (+) True G2090166
TU2390924 lncRNA upstream 70826 49472480 ~ 49475238 (+) True G2090162
TU2390923 lncRNA upstream 71366 49472480 ~ 49474698 (+) False G2090162
TU2390919 lncRNA upstream 74947 49470835 ~ 49471117 (+) True G2090161
TU2390969 lncRNA downstream 3867 49561872 ~ 49567533 (+) True G2090199
TU2391202 lncRNA downstream 39246 49597251 ~ 49597460 (+) True G2090398
TU2391211 lncRNA downstream 49529 49607534 ~ 49607846 (+) True G2090406
TU2391213 lncRNA downstream 50271 49608276 ~ 49656978 (+) True G2090407
TU2391233 lncRNA downstream 83289 49641294 ~ 49642939 (+) True G2090424
XR_005040013.1 mRNA upstream 222198 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 279429 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 359951 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 771383 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 907878 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 907912 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 909060 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 909090 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 1107714 50665719 ~ 50850459 (+) True LOC110507254
TU2390858 other upstream 211881 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 222461 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 229838 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 487169 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 618772 48926975 ~ 48927292 (+) True G2089906
TU2391337 other downstream 227122 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 524058 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 794363 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1811759 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1811929 51369934 ~ 51370763 (+) True G2091895

Expression Profile