RNA id: TU2391211


Basic Information

Item Value
RNA id TU2391211
length 313
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2090406
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49607534 ~ 49607846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACTACCACCCCATCCATAGTGCTGTATTACATCTGTCCAGACCCAGATTCTACCACCCCATCCATAGTGCTGTATTACATCTGTCCAGACCCAGATACTACCACCCCATCCATAGTGCCTGTATTACATCTGTCCAGACCCAGATACTACCACCCCATCCATAGTACCTGTATTACATCTGTCCAGACCCAGATACTACCACCCCATCCATCGTGCTGTATTACATCTGTCCAGACCCAGATACTACCACCCCATCCATAGTACCTGTATTACATCTGTCCAGACCCAGATACTACCACCCCATCCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391202 lncRNA upstream 10074 49597251 ~ 49597460 (+) True G2090398
TU2390968 lncRNA upstream 40001 49533693 ~ 49567533 (+) False G2090199
TU2390969 lncRNA upstream 40001 49561872 ~ 49567533 (+) True G2090199
TU2390972 lncRNA upstream 49529 49546064 ~ 49558005 (+) True G2090202
TU2390934 lncRNA upstream 121479 49485381 ~ 49486055 (+) True G2090170
TU2391213 lncRNA downstream 430 49608276 ~ 49656978 (+) True G2090407
TU2391233 lncRNA downstream 33448 49641294 ~ 49642939 (+) True G2090424
TU2391267 lncRNA downstream 80839 49688685 ~ 49689513 (+) False G2090454
TU2391268 lncRNA downstream 80839 49688685 ~ 49689513 (+) True G2090454
TU2391299 lncRNA downstream 121363 49729209 ~ 49730944 (+) False G2090479
XR_005040013.1 mRNA upstream 283668 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 340899 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 421421 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 832853 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 858037 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 858071 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 859219 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 859249 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 1057873 50665719 ~ 50850459 (+) True LOC110507254
TU2390858 other upstream 273351 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 283931 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 291308 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 548639 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 680242 48926975 ~ 48927292 (+) True G2089906
TU2391337 other downstream 177281 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 474217 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 744522 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1761918 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1762088 51369934 ~ 51370763 (+) True G2091895

Expression Profile