RNA id: TU2391268


Basic Information

Item Value
RNA id TU2391268
length 530
lncRNA type intronic
GC content 0.53
exon number 2
gene id G2090454
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49688685 ~ 49689513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtaactgatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggcgcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctagttcgcgcccgggtatgggcgaggggacggtctaaatttgtactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaactgatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggcgcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctggttcgcgcccgggtatgggcgaggggacggtctaaatttgtactgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391213 lncRNA upstream 31707 49608276 ~ 49656978 (+) True G2090407
TU2391233 lncRNA upstream 45746 49641294 ~ 49642939 (+) True G2090424
TU2391211 lncRNA upstream 80839 49607534 ~ 49607846 (+) True G2090406
TU2391202 lncRNA upstream 91225 49597251 ~ 49597460 (+) True G2090398
TU2390969 lncRNA upstream 121152 49561872 ~ 49567533 (+) True G2090199
TU2391299 lncRNA downstream 39696 49729209 ~ 49730944 (+) False G2090479
TU2391297 lncRNA downstream 40383 49729896 ~ 49730944 (+) True G2090479
TU2391318 lncRNA downstream 67144 49756657 ~ 49772798 (+) True G2090497
TU2391320 lncRNA downstream 68429 49757942 ~ 49758816 (+) False G2090499
TU2391321 lncRNA downstream 68429 49757942 ~ 49758816 (+) False G2090499
XR_005040013.1 mRNA upstream 364819 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 422050 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 502572 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 914004 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 776370 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 776404 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 777552 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 777582 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 976206 50665719 ~ 50850459 (+) True LOC110507254
TU2390858 other upstream 354502 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 365082 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 372459 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 629790 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 761393 48926975 ~ 48927292 (+) True G2089906
TU2391337 other downstream 95614 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 392550 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 662855 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1680251 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1680421 51369934 ~ 51370763 (+) True G2091895