RNA id: TU2391320


Basic Information

Item Value
RNA id TU2391320
length 394
lncRNA type intronic
GC content 0.43
exon number 2
gene id G2090499
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49757942 ~ 49758816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcccctctcccgctctactctccctctctactccccctctctaccctccaggGGCGCCATACTACactggctgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccatgtaaaacaacacctatcatactactatgactgaccctggaAAACAACACcgatcatactactatgactgaccctgtaaaacaacacctatcacactactatgactgaccctgtaaaaaaacacctatcatactactatgactgaccctgtaaaacaacacctatcatacaactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaaaaaCACCTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391299 lncRNA upstream 26998 49729209 ~ 49730944 (+) False G2090479
TU2391297 lncRNA upstream 26998 49729896 ~ 49730944 (+) True G2090479
TU2391267 lncRNA upstream 68429 49688685 ~ 49689513 (+) False G2090454
TU2391268 lncRNA upstream 68429 49688685 ~ 49689513 (+) True G2090454
TU2391233 lncRNA upstream 115003 49641294 ~ 49642939 (+) True G2090424
TU2391328 lncRNA downstream 6191 49765007 ~ 49765533 (+) True G2090501
TU2391336 lncRNA downstream 23285 49782101 ~ 49788805 (+) False G2090508
TU2391342 lncRNA downstream 24195 49783011 ~ 49788805 (+) False G2090508
TU2391363 lncRNA downstream 69301 49828117 ~ 49828635 (+) True G2090526
TU2391366 lncRNA downstream 81415 49840231 ~ 49840717 (+) True G2090529
XR_005040013.1 mRNA upstream 434076 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 491307 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 571829 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 983261 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 707067 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 707101 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 708249 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 708279 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 906903 50665719 ~ 50850459 (+) True LOC110507254
TU2390858 other upstream 423759 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 434339 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 441716 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 699047 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 830650 48926975 ~ 48927292 (+) True G2089906
TU2391337 other downstream 26311 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 323247 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 593552 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1610948 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1611118 51369934 ~ 51370763 (+) True G2091895

Expression Profile