RNA id: TU2391337


Basic Information

Item Value
RNA id TU2391337
length 1471
RNA type TUCP
GC content 0.36
exon number 4
gene id G2090508
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49782101 ~ 49788805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaatggggttttagataaatcaacaccacatgacctaacatctggtaatggggttttagataagTCAACAACACatggtaatggggttttagataaatcaacaacacatgacctaacatttggtaatggggttttagataaatcaacaacacatgacctaacatctggtaatggggttttagataaatcaacaacacatgacctaacacctgttaatggggttttagataaatcacATGACCTAACATCTGCTAAAggggttttagataaatcaacaacacatgacctaacaTTCATTTGGTAACggggttttagataaatcaacaacacatgacctaacaTCTGGTAATAGGGTTTcagataaatcaacaacacatgacctaacagctggtaatggggttttagataaagCAACAACACATGGTAATGGGGTTTTTAGATAAAGAAAGAACACATGACCTAACACCTGGTGatggggttttagataaatcaacaacacatgacaaaaCACCTGGTAATGGAGTTTTAGATAAgtcaacaacacatgacctaacatctggtaatggggttttagataaatcaacaacacatgacctaacaTCTGGTAATGGGTTTAggataaatcaacaacacatggtaattgggttttagataaatcaacaacacatgacctaacatctggtaatggggttttagataagtcaacaacacatgacctaacaTCAGGTAATGGGGgtttagataaatcaacaacacatgaccAAACAACCTGGTAATGGagttttagataaatcaacaacacatgacctaacatctggtaatggggttttagataaatcaacaacacatggtAACGGGGTTTTAGATAAAAGAACAACACatggtaatggggttttagataaatcaacaacacatgacctaacatctggtaatggggttttagataaatcaacaacacatgacctaacatctggtaatggggttttagataaagCAACAACACATGGTAACAGGGTTTTAGATAAAGGAACAACACatggtaatggggttttagataaatcaacaacacatggtAACGGGGTTTTAGATAAAGGAACAACACatggtaatggggttttagataaatcaacaacacatgacctaacatctggtaatggggttttagataaatcaacaacacatgacctaacatctggtaatggggttttatataaatcaacaacacatgacctaacagctggtaatggggttttagataaagCAACAACACATGACCTAACATctggtaatggggttttagataaatcaacaacacatgacctaacaGCTGGTAATCTGGTTTTAGATAAAGGAACAACACatggtaatggggttttagataaagCTACAACACATGACCAAACATCTGGTAATGGagttttagataaatcaacaacacctgacctaacatctggtaatggggttttagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391318 lncRNA upstream 12329 49756657 ~ 49772798 (+) True G2090497
TU2391328 lncRNA upstream 19594 49765007 ~ 49765533 (+) True G2090501
TU2391320 lncRNA upstream 26311 49757942 ~ 49758816 (+) False G2090499
TU2391321 lncRNA upstream 26311 49757942 ~ 49758816 (+) False G2090499
TU2391323 lncRNA upstream 26311 49757942 ~ 49758816 (+) True G2090499
TU2391363 lncRNA downstream 39312 49828117 ~ 49828635 (+) True G2090526
TU2391366 lncRNA downstream 51426 49840231 ~ 49840717 (+) True G2090529
TU2391394 lncRNA downstream 89328 49878133 ~ 49879128 (+) False G2090548
TU2391396 lncRNA downstream 89328 49878133 ~ 49883194 (+) True G2090548
TU2391401 lncRNA downstream 100490 49889295 ~ 49895683 (+) False G2090551
XR_005040013.1 mRNA upstream 461261 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 518492 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 599014 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1010446 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 677078 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 677112 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 678260 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 678290 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 876914 50665719 ~ 50850459 (+) True LOC110507254
TU2390858 other upstream 450944 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 461524 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 468901 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 726232 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 857835 48926975 ~ 48927292 (+) True G2089906
TU2391495 other downstream 293258 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 563563 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1580959 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1581129 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 1681083 51469888 ~ 51470391 (+) True G2091960

Expression Profile