RNA id: TU2391363


Basic Information

Item Value
RNA id TU2391363
length 314
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2090526
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49828117 ~ 49828635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATCAATCACATTTAAATACAGCCTGGACACTAATTTATCAATCACATTTAAATACAGCCTGGGTACTAATCTATCAATCACATTTAAATACAGCCTGGACACTAATCTATCAATCACATTTAAATACAGTCTGGACACTAATCTATCAATCACAAGTTTGTACTCTTTGTAGTCCTAATGGAAACAACAGTCCACACATAAACCACTCCAATGTGAGGGTGTATGTGGGCAGGTTAGGATAAACCACTCCAACGTGAGGGTGTATGTGGGGAGGTTAGGATAAACCACTCCAACGTGAGGGTGTATGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391336 lncRNA upstream 39312 49782101 ~ 49788805 (+) False G2090508
TU2391342 lncRNA upstream 39312 49783011 ~ 49788805 (+) False G2090508
TU2391318 lncRNA upstream 55319 49756657 ~ 49772798 (+) True G2090497
TU2391328 lncRNA upstream 62584 49765007 ~ 49765533 (+) True G2090501
TU2391320 lncRNA upstream 69301 49757942 ~ 49758816 (+) False G2090499
TU2391366 lncRNA downstream 11596 49840231 ~ 49840717 (+) True G2090529
TU2391394 lncRNA downstream 49498 49878133 ~ 49879128 (+) False G2090548
TU2391396 lncRNA downstream 49498 49878133 ~ 49883194 (+) True G2090548
TU2391401 lncRNA downstream 60660 49889295 ~ 49895683 (+) False G2090551
TU2391402 lncRNA downstream 60660 49889295 ~ 49892756 (+) True G2090551
XR_005040013.1 mRNA upstream 504251 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 561482 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 642004 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1053436 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 637248 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 637282 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 638430 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 638460 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 837084 50665719 ~ 50850459 (+) True LOC110507254
TU2391337 other upstream 39312 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 493934 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 504514 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 511891 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 769222 49058005 ~ 49058895 (+) True G2089935
TU2391495 other downstream 253428 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 523733 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1541129 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1541299 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 1641253 51469888 ~ 51470391 (+) True G2091960

Expression Profile