RNA id: TU2391401


Basic Information

Item Value
RNA id TU2391401
length 314
lncRNA type intronic
GC content 0.51
exon number 2
gene id G2090551
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49889295 ~ 49895683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgagtggtgctgcactaggtgatgatgagtggtgctgcactaggtgatgatgagtggtgcttcactaggtgatgatgagtggtgctgcactaggtgatgatgagtggtgctgcactaggtgatgatgagtggtgctgcactaggtgatgatgagtggcgcttcactaggtgatgatgagtggtgcttcactaggtgatgatgagtggcgcttcactaggtgatgatgagtggtgcttcactaggtgatgatgagtggtgctgcactaggtgatgatgagtggcgcttcactaggtgatgatgagtggtgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391396 lncRNA upstream 6101 49878133 ~ 49883194 (+) True G2090548
TU2391394 lncRNA upstream 10167 49878133 ~ 49879128 (+) False G2090548
TU2391366 lncRNA upstream 48578 49840231 ~ 49840717 (+) True G2090529
TU2391363 lncRNA upstream 60660 49828117 ~ 49828635 (+) True G2090526
TU2391336 lncRNA upstream 100490 49782101 ~ 49788805 (+) False G2090508
TU2391413 lncRNA downstream 17266 49912949 ~ 49913869 (+) True G2090562
TU2391435 lncRNA downstream 80855 49976538 ~ 49978058 (+) True G2090582
TU2391447 lncRNA downstream 96567 49992250 ~ 49993690 (+) True G2090592
TU2391474 lncRNA downstream 147596 50043279 ~ 50044309 (+) False G2090618
TU2391475 lncRNA downstream 147596 50043279 ~ 50044006 (+) True G2090618
XR_005040013.1 mRNA upstream 565429 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 622660 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 703182 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1114614 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 570200 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 570234 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 571382 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 571412 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 770036 50665719 ~ 50850459 (+) True LOC110507254
TU2391337 other upstream 100490 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 555112 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 565692 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 573069 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 830400 49058005 ~ 49058895 (+) True G2089935
TU2391495 other downstream 186380 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 456685 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1474081 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1474251 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 1574205 51469888 ~ 51470391 (+) True G2091960

Expression Profile