RNA id: TU2391435


Basic Information

Item Value
RNA id TU2391435
length 297
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2090582
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49976538 ~ 49978058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggttagagatagagatagagatagagtcaTACCTGTctacaggtacagggttagagatagagatagagtcatacctgtatacaggtacagggttagagatagagatagagtcaTACCtgtctacaggaacagggttagagatagAAATAGAGTCATACCTGTctacaggtacagggttagagatagtaatAGAGATAGAGTCATACCTGTctacaggtacagggttagagatagagatagagtcaTACCTGTctacaggtacagggttagagattTTAATAGAGATAGAGTCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391413 lncRNA upstream 62669 49912949 ~ 49913869 (+) True G2090562
TU2391401 lncRNA upstream 80855 49889295 ~ 49895683 (+) False G2090551
TU2391402 lncRNA upstream 83782 49889295 ~ 49892756 (+) True G2090551
TU2391396 lncRNA upstream 93344 49878133 ~ 49883194 (+) True G2090548
TU2391394 lncRNA upstream 97410 49878133 ~ 49879128 (+) False G2090548
TU2391447 lncRNA downstream 14192 49992250 ~ 49993690 (+) True G2090592
TU2391474 lncRNA downstream 65221 50043279 ~ 50044309 (+) False G2090618
TU2391475 lncRNA downstream 65221 50043279 ~ 50044006 (+) True G2090618
TU2391479 lncRNA downstream 73287 50051345 ~ 50051867 (+) True G2090622
TU2391483 lncRNA downstream 83379 50061437 ~ 50061947 (+) True G2090626
XR_005040013.1 mRNA upstream 652672 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 709903 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 790425 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1201857 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 487825 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 487859 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 489007 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 489037 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 687661 50665719 ~ 50850459 (+) True LOC110507254
TU2391337 other upstream 187733 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 642355 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 652935 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 660312 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 917643 49058005 ~ 49058895 (+) True G2089935
TU2391495 other downstream 104005 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 374310 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1391706 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1391876 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 1491830 51469888 ~ 51470391 (+) True G2091960

Expression Profile