RNA id: TU2391976


Basic Information

Item Value
RNA id TU2391976
length 522
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2091055
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50252567 ~ 50253088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcaaaaaatattaaggcagaacagttgaaactggagcagcagcacagccagatggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagagaaggagagaattagagaacgcacacctagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctagccccccgacacataaactactactgcagcataaatactggaggctgagacaggaggggtttcacctatttcacctttatttaaccaggtaggctagttgagaataagttttcatttacaactgcgacctggctaagataaagcaaagcagtgcaacacatacaacaacacagagttacacatggagtaaacaaacatacagtcaataatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391969 lncRNA upstream 3398 50248754 ~ 50249169 (+) True G2091048
TU2391959 lncRNA upstream 8203 50244135 ~ 50244364 (+) True G2091038
TU2391955 lncRNA upstream 9253 50241928 ~ 50243314 (+) True G2091034
TU2391557 lncRNA upstream 39123 50212657 ~ 50213444 (+) True G2090694
TU2391483 lncRNA upstream 190620 50061437 ~ 50061947 (+) True G2090626
TU2391978 lncRNA downstream 31 50253119 ~ 50253343 (+) True G2091057
TU2392011 lncRNA downstream 38274 50291362 ~ 50291817 (+) True G2091080
TU2392023 lncRNA downstream 97694 50350782 ~ 50351071 (+) True G2091092
TU2392029 lncRNA downstream 106239 50359327 ~ 50359537 (+) True G2091098
TU2392069 lncRNA downstream 138376 50391464 ~ 50391742 (+) True G2091131
XR_005040013.1 mRNA upstream 928701 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 985932 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 1066454 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1477886 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 212795 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 212829 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 213977 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 214007 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 412631 50665719 ~ 50850459 (+) True LOC110507254
TU2391495 other upstream 164876 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 463762 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 918384 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 928964 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 936341 49312743 ~ 49316226 (+) True G2090091
TU2392024 other downstream 99280 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1116676 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1116846 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 1216800 51469888 ~ 51470391 (+) True G2091960

Expression Profile