RNA id: TU2392011


Basic Information

Item Value
RNA id TU2392011
length 456
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G2091080
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50291362 ~ 50291817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcaaagaggcactgagtttgaaggttggccttaaaatacatccacaggtacacctccaattgactcaaattctgTCAATTAGCCTagaagctttagaagcttctaaagccatgacatcatctaagttagtgtatgtaaacttttgacccactggaattgtgatacagtgaataataagtgaaataatctgtctgtaaacaattgtaaacaaatagtagatgtcctaactgacttgtcaaaattatagtttgttaacaagaaatatacATTTAGATGTGTTGATCTGTCTTcagaatatagatctagatgtgttgaatatagatctagatgtgttgaatatagatctagatgcgttgaatatagatctagatgtgttgaatatagatctagatgtgttgaatatggatctagatgtgttgaatatagatttggatgtgttgaatatagatctagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2391978 lncRNA upstream 38019 50253119 ~ 50253343 (+) True G2091057
TU2391976 lncRNA upstream 38274 50252567 ~ 50253088 (+) True G2091055
TU2391969 lncRNA upstream 42193 50248754 ~ 50249169 (+) True G2091048
TU2391959 lncRNA upstream 46998 50244135 ~ 50244364 (+) True G2091038
TU2391955 lncRNA upstream 48048 50241928 ~ 50243314 (+) True G2091034
TU2392023 lncRNA downstream 58965 50350782 ~ 50351071 (+) True G2091092
TU2392029 lncRNA downstream 67510 50359327 ~ 50359537 (+) True G2091098
TU2392069 lncRNA downstream 99647 50391464 ~ 50391742 (+) True G2091131
TU2392074 lncRNA downstream 101855 50393672 ~ 50397113 (+) True G2091135
TU2392099 lncRNA downstream 133426 50425243 ~ 50427712 (+) False G2091153
XR_005040013.1 mRNA upstream 967496 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 1024727 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 1105249 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1516681 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 174066 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 174100 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 175248 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 175278 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 373902 50665719 ~ 50850459 (+) True LOC110507254
TU2391495 other upstream 203671 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 502557 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 957179 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 967759 49323169 ~ 49323603 (+) True LOC118944717
TU2390846 other upstream 975136 49312743 ~ 49316226 (+) True G2090091
TU2392024 other downstream 60551 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 1077947 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 1078117 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 1178071 51469888 ~ 51470391 (+) True G2091960

Expression Profile