RNA id: TU2392100


Basic Information

Item Value
RNA id TU2392100
length 419
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G2091153
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50425243 ~ 50429069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaagacagcactaccctgaaatacccttctataatccaagacagcactaccctgaaatacccttctataatccaagacagcactaccctgaaatacccttctataatccaagacagcactaccctgaaatacccttctataatccaagacagcactaccctgAAATACACTTCAATACtccaagacagcactaccctgaaatacccttcaatactccaagacagcactaccctgaaatacccttctataatccaagacagcactaccctgaaatacccttcaatactccaagacagcactaccctgaaatacccttctataatccaagacagcactaccctgAAATACCCTTCTATACtccaagacagcactaccctgaaatacccttctataatccaagacagcactaccctgAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392074 lncRNA upstream 29661 50393672 ~ 50397113 (+) True G2091135
TU2392069 lncRNA upstream 35032 50391464 ~ 50391742 (+) True G2091131
TU2392029 lncRNA upstream 67237 50359327 ~ 50359537 (+) True G2091098
TU2392023 lncRNA upstream 75703 50350782 ~ 50351071 (+) True G2091092
TU2392011 lncRNA upstream 134957 50291362 ~ 50291817 (+) True G2091080
TU2392133 lncRNA downstream 53512 50482581 ~ 50486984 (+) True G2091182
TU2392134 lncRNA downstream 58894 50487963 ~ 50490523 (+) True G2091183
TU2392223 lncRNA downstream 89275 50518344 ~ 50518653 (+) True G2091255
TU2392249 lncRNA downstream 109972 50539041 ~ 50539315 (+) True G2091276
TU2392283 lncRNA downstream 151690 50580759 ~ 50581478 (+) False G2091308
XR_005040013.1 mRNA upstream 1102908 49323013 ~ 49323866 (+) False LOC118944717
XM_036965366.1 mRNA upstream 1160139 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 1240661 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 1652093 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965521.1 mRNA downstream 36814 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 36848 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 37996 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 38026 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 236650 50665719 ~ 50850459 (+) True LOC110507254
TU2392024 other upstream 73607 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 339083 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 637969 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1092591 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1103171 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 940695 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 940865 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 1040819 51469888 ~ 51470391 (+) True G2091960

Expression Profile