RNA id: TU2392134


Basic Information

Item Value
RNA id TU2392134
length 1724
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id G2091183
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50487963 ~ 50490523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaacacacatgataactactaacacacacgacaaccaccaacacacgacaaccaccaacacacaagacaaccaccaacacacgacaaccaccaacacacaagacaaccaccaacacacgacaaccaccaacacacatgataactactaacacacacgacaaccaccaacacacgacaaccaccaacacacgacaaccaccaacacacacaacaaccGCCAACACATgacaaccaccaacacacacgataacaactaacacacacaacaaccaccaacacacgacaaccaccaacacacacgataacaactaacacacacaacaaccaccaacacacacaacaaccaccaacacacaagataacaactaacacacacaacaaccaccaacacacacaacaaccacCAACACACACGATAACAACTAACACACACAACAACCACCAACAAAcgacaaccaccaacacacatgctaactactaacacacacaacaaccaccaacacacacaacaaacaccaaCACACGACAAACCAACACACGACAACCACCAACACACGACAACCACCAACACATGACCACCACCAACACACACGATAACTactaacacacacaacaaacGCCAACACACGACAAACCAACACACGACAACCACCAACACACGACAACCACCAACACATGACCACCACCAACACACACGATAACTACTAACACACACAACAACCACCAACTCACACAACAAccaccaacacacacaacaaccacaaacacacacaacaaccaccaacacacacaacaaccaccaacacacacaacaaccacaaacacacacaacaaacaccaacacacacaacaaccaccaacacacacaacaaccacaaacacacacaacaaccaccaacacacacagcaaccaccaacacacacaacaaccaccaacacacacaacaaacaccaaCACACATGATAACTACTAACACACATAACTACTAACACACATAACTACAAACACACATGATAACTACTAAAACACATGATAACTACTAAAACACATGATAACTACTAACACACATGATAACCACTAACATACATGATAACTACTAACCCACATAACTACTAATACACATGATAACTACTAACACACATGATAACTACTAACACACATGATAACTACTAACATACATGATAACTACTAACATACATGATAACTACTAACATACATGATAACTACTAACACACATAACTACTAATACACATGATAACTACTAACACTTAACTACTAACACACATGATAACTACTAACACACATGATAACTACTAACACACATGATAACTACTAACACACATGATAACTACTAACACACATAACTACTAACACACATAATAACTACTAACACATAACTACTAACACACATGATAACTACTAACACACATGATAACTACTAACAACTAAATCCATTGTAAAAAAAGGTTTTCACCATCGTCTGTCAGTTCCTCCTCTTGGTTTAACCCAGGGACGTCTCCTGGCGGGCTGGTGGGGTTAAAGATGGCCTGAAGTACAGCTCTGTCATGGGCTGAAGCCATTGTTCCAGATGGGTGGAAAGCAGAAGGCAGAGTAGTGGAATTGCGATCCTAAGTGGTGGGAGAGGGGTGCATTTTCTCCTCAAATTCTCACAGATTTCTCCTCAACCAATCGAAGCAGGGGGTGGAAACAGGCAGACTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392133 lncRNA upstream 979 50482581 ~ 50486984 (+) True G2091182
TU2392100 lncRNA upstream 58894 50426774 ~ 50429069 (+) True G2091153
TU2392099 lncRNA upstream 60251 50425243 ~ 50427712 (+) False G2091153
TU2392074 lncRNA upstream 90850 50393672 ~ 50397113 (+) True G2091135
TU2392069 lncRNA upstream 96221 50391464 ~ 50391742 (+) True G2091131
TU2392223 lncRNA downstream 27821 50518344 ~ 50518653 (+) True G2091255
TU2392249 lncRNA downstream 48518 50539041 ~ 50539315 (+) True G2091276
TU2392283 lncRNA downstream 90236 50580759 ~ 50581478 (+) False G2091308
TU2392284 lncRNA downstream 90462 50580985 ~ 50581631 (+) True G2091308
TU2392304 lncRNA downstream 108785 50599308 ~ 50599510 (+) True G2091323
XM_036965521.1 mRNA upstream 11355 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA upstream 11355 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA upstream 11355 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA upstream 11355 50467095 ~ 50476608 (+) True LOC110508133
XR_005040013.1 mRNA upstream 1164097 49323013 ~ 49323866 (+) False LOC118944717
XM_036964625.1 mRNA downstream 175196 50665719 ~ 50850459 (+) True LOC110507254
XM_036965435.1 mRNA downstream 982997 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 982997 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 982997 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 982997 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 134796 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 400272 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 699158 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1153780 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1164360 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 879241 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 879411 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 979365 51469888 ~ 51470391 (+) True G2091960

Expression Profile