RNA id: TU2392249


Basic Information

Item Value
RNA id TU2392249
length 275
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G2091276
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50539041 ~ 50539315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggagggcaggtagtttgcccccggtgatgcgttgtgcagacctcattaccctctggagagccttgcggttgaggcggagcagttgccgtaccaggcggtgatacagcccgacaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccaaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacgatgctgtctgtgtgagtggaccaattcagtttgtctgtgatgtgtatgccgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392223 lncRNA upstream 20388 50518344 ~ 50518653 (+) True G2091255
TU2392134 lncRNA upstream 48518 50487963 ~ 50490523 (+) True G2091183
TU2392133 lncRNA upstream 52057 50482581 ~ 50486984 (+) True G2091182
TU2392100 lncRNA upstream 109972 50426774 ~ 50429069 (+) True G2091153
TU2392099 lncRNA upstream 111329 50425243 ~ 50427712 (+) False G2091153
TU2392283 lncRNA downstream 41444 50580759 ~ 50581478 (+) False G2091308
TU2392284 lncRNA downstream 41670 50580985 ~ 50581631 (+) True G2091308
TU2392304 lncRNA downstream 59993 50599308 ~ 50599510 (+) True G2091323
TU2392307 lncRNA downstream 60945 50600260 ~ 50600598 (+) True G2091326
TU2392320 lncRNA downstream 70264 50609579 ~ 50610029 (+) True G2091339
XM_036965521.1 mRNA upstream 62433 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA upstream 62433 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA upstream 62433 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA upstream 62433 50467095 ~ 50476608 (+) True LOC110508133
XR_005040013.1 mRNA upstream 1215175 49323013 ~ 49323866 (+) False LOC118944717
XM_036964625.1 mRNA downstream 126404 50665719 ~ 50850459 (+) True LOC110507254
XM_036965435.1 mRNA downstream 934205 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 934205 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 934205 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 934205 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 185874 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 451350 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 750236 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1204858 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1215438 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 830449 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 830619 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 930573 51469888 ~ 51470391 (+) True G2091960

Expression Profile