RNA id: TU2392283


Basic Information

Item Value
RNA id TU2392283
length 234
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G2091308
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50580759 ~ 50581631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGACAGAGGATTAGGTTACAGCCAATCAGACAGAGGTCCAGGTTACATTCAATCAGACAGAGGATTAGTTTACATTCAATCAGACAGAGGATTAGTTTACATTCAATCAGACAGAGGATTAGGTTACATTCAATCAGACAGATGATTAGGTTACAGCCAATCAGACAGAGGATTAGGTTACAGCCAATCAGACAGAGGATTAGGTTACATTCAATCAGACAGAGGATTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392249 lncRNA upstream 41444 50539041 ~ 50539315 (+) True G2091276
TU2392223 lncRNA upstream 62106 50518344 ~ 50518653 (+) True G2091255
TU2392134 lncRNA upstream 90236 50487963 ~ 50490523 (+) True G2091183
TU2392133 lncRNA upstream 93775 50482581 ~ 50486984 (+) True G2091182
TU2392100 lncRNA upstream 151690 50426774 ~ 50429069 (+) True G2091153
TU2392304 lncRNA downstream 17830 50599308 ~ 50599510 (+) True G2091323
TU2392307 lncRNA downstream 18782 50600260 ~ 50600598 (+) True G2091326
TU2392320 lncRNA downstream 28101 50609579 ~ 50610029 (+) True G2091339
TU2392331 lncRNA downstream 41140 50622618 ~ 50622885 (+) True G2091350
TU2392344 lncRNA downstream 47790 50629268 ~ 50629484 (+) True G2091363
XM_036965521.1 mRNA upstream 104151 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA upstream 104151 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA upstream 104151 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA upstream 104151 50467095 ~ 50476608 (+) True LOC110508133
XR_005040013.1 mRNA upstream 1256893 49323013 ~ 49323866 (+) False LOC118944717
XM_036964625.1 mRNA downstream 84241 50665719 ~ 50850459 (+) True LOC110507254
XM_036965435.1 mRNA downstream 892042 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 892042 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 892042 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 892042 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 227592 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 493068 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 791954 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1246576 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1257156 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 788286 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 788456 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 888410 51469888 ~ 51470391 (+) True G2091960

Expression Profile