RNA id: TU2392344


Basic Information

Item Value
RNA id TU2392344
length 217
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2091363
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50629268 ~ 50629484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaatatagtgaaacacagcttagccttttgttaatcaccctgtcatctcagattttgaaattatgctttacagccaaagcaagacaaacttttgtgtaagtttatcgatagcctagcatagcatcatgtccagctagcagcaggaagcttggtcacgaaaatcagaaaagcaatcaaatttaccgtttacctttgatgatcttcggatgttttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392331 lncRNA upstream 6383 50622618 ~ 50622885 (+) True G2091350
TU2392320 lncRNA upstream 19239 50609579 ~ 50610029 (+) True G2091339
TU2392307 lncRNA upstream 28670 50600260 ~ 50600598 (+) True G2091326
TU2392304 lncRNA upstream 29758 50599308 ~ 50599510 (+) True G2091323
TU2392284 lncRNA upstream 47637 50580985 ~ 50581631 (+) True G2091308
TU2392350 lncRNA downstream 2847 50632331 ~ 50632563 (+) True G2091369
TU2392430 lncRNA downstream 67775 50697259 ~ 50698814 (+) True G2091431
TU2392443 lncRNA downstream 75552 50705036 ~ 50710514 (+) True G2091434
TU2392437 lncRNA downstream 87149 50716633 ~ 50720629 (+) True G2091433
TU2392449 lncRNA downstream 87389 50716873 ~ 50724504 (+) True G2091438
XM_036965521.1 mRNA upstream 152660 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA upstream 152660 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA upstream 152660 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA upstream 152660 50467095 ~ 50476608 (+) True LOC110508133
XR_005040013.1 mRNA upstream 1305402 49323013 ~ 49323866 (+) False LOC118944717
XM_036964625.1 mRNA downstream 36235 50665719 ~ 50850459 (+) True LOC110507254
XM_036965435.1 mRNA downstream 844036 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 844036 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 844036 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 844036 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 276101 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 541577 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 840463 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1295085 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1305665 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 740280 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 740450 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 840404 51469888 ~ 51470391 (+) True G2091960

Expression Profile