RNA id: TU2392443


Basic Information

Item Value
RNA id TU2392443
length 352
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2091434
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50705036 ~ 50710514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCAAGTCCTATAGTCCCAGTCTATATGGAtaaggtcctatcatcccagtctaaatggatcaggtcctatcaatcCAGTCTAAATGattcaggtcctatcatcccatccCAATCTAAATGAATAAGGTCCTATCATACCATCCCAGTTTAAATGGAAcatgtcctatcatcccagtctataTGGATAAGGTCCTATAATCCCAGTCTAAATTGATTAGGTCCTATATATCCAAGTCGAAATTGATTAGGtactatcatcccagtctaaatggatcaggtcctatcatccctttctaaatggatcaggtcctatcatccttgtctaaatggatcaggcccTATCATCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392430 lncRNA upstream 6222 50697259 ~ 50698814 (+) True G2091431
TU2392350 lncRNA upstream 72473 50632331 ~ 50632563 (+) True G2091369
TU2392344 lncRNA upstream 75552 50629268 ~ 50629484 (+) True G2091363
TU2392331 lncRNA upstream 82151 50622618 ~ 50622885 (+) True G2091350
TU2392320 lncRNA upstream 95007 50609579 ~ 50610029 (+) True G2091339
TU2392437 lncRNA downstream 6119 50716633 ~ 50720629 (+) True G2091433
TU2392449 lncRNA downstream 6359 50716873 ~ 50724504 (+) True G2091438
TU2392456 lncRNA downstream 33134 50743648 ~ 50744283 (+) True G2091443
TU2392457 lncRNA downstream 43411 50753925 ~ 50754416 (+) True G2091444
TU2392461 lncRNA downstream 43962 50754476 ~ 50755039 (+) True G2091446
XM_036965521.1 mRNA upstream 228428 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA upstream 228428 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA upstream 228428 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA upstream 228428 50467095 ~ 50476608 (+) True LOC110508133
XR_005040013.1 mRNA upstream 1381170 49323013 ~ 49323866 (+) False LOC118944717
XM_036965435.1 mRNA downstream 763006 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 763006 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 763006 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 763006 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 763006 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 351869 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 617345 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 916231 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1370853 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1381433 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 659250 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 659420 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 759374 51469888 ~ 51470391 (+) True G2091960

Expression Profile