RNA id: TU2392405


Basic Information

Item Value
RNA id TU2392405
length 705
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G2091410
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50862005 ~ 50869242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttagaaccactatatagagaatggggtgcactacttagaaccagtggactatatagagaatagattgcactacttagaacctgtggactatatagagaatagggtgcactacttagaaccactatatagagaatagggtgcactacttataaccactatatagagaatggggtgcactacttagaaccagtggactatataAGAGAATAAGGGTGCACTACTAAGAACCACGATATAGAGAtaggggtgcactacttagaaccagtggaccATATTAGAAAATAGTGTGCACTACTTGGAACCATTAAATAGGGAATTGGGGGCACTACATAGAACCAGTGCacaatatagagaatagggggtactacttagaaccactatatagagaatattgggcactacttagaaccagtgatatatatagagaataggttgcATTACTTAgcaccactatatagagaatagggagcACTACATAGAACCagtacactatatagagaatagggggtactacttagaaccactatatagagaatagggtgcactacatagaaccactatatagagtatggggtgcactacttagaaccactatatagagaatcgggtgcactacttagaaccagtggactatatagagaatagggtgcactacttagaacctgtggactatatagagaatagggtgcactacttagaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392509 lncRNA upstream 17640 50842166 ~ 50844365 (+) True G2091483
TU2392489 lncRNA upstream 46993 50792903 ~ 50815012 (+) True G2091466
TU2392488 lncRNA upstream 47579 50802498 ~ 50814426 (+) True G2091465
TU2392486 lncRNA upstream 54580 50792048 ~ 50807425 (+) False G2091464
TU2392483 lncRNA upstream 54580 50794790 ~ 50807425 (+) False G2091464
TU2392514 lncRNA downstream 429 50869671 ~ 50870463 (+) True G2091488
TU2392409 lncRNA downstream 2540 50871782 ~ 50874409 (+) True G2091414
TU2392534 lncRNA downstream 55284 50924526 ~ 50925944 (+) False G2091505
TU2392535 lncRNA downstream 55284 50924526 ~ 50928521 (+) True G2091505
TU2392536 lncRNA downstream 56228 50925470 ~ 50928108 (+) True G2091506
XM_036964625.1 mRNA upstream 11546 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 385397 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA upstream 385397 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA upstream 385397 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA upstream 385397 50467095 ~ 50476608 (+) True LOC110508133
XM_036965435.1 mRNA downstream 604278 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 604278 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 604278 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 604278 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 604278 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 508838 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 774314 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1073200 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1527822 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1538402 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 500522 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 500692 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 600646 51469888 ~ 51470391 (+) True G2091960

Expression Profile