RNA id: TU2392567


Basic Information

Item Value
RNA id TU2392567
length 424
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G2091533
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50963149 ~ 50963626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacagtagagaggctatatacagtagcgaggctatatacagtagagaggatatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagcgaggttatatacagtagagatgctatatacagtagcgaggctacatacagtagagaggctatatacagtagcgaggctatatacagtagcgaggctatatacagtagagaggctatatacagtagcgaggctatatacagtagaggctatatacagtagagaggctatatacagtagcgaggctatatacagtagcgaggctacatacagacactggttagtcaggctgattgaggtagtatgtacatgtagatatggttaaagtgactgtgcatatatgatgaacagagtacatggattttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392538 lncRNA upstream 31525 50926088 ~ 50931624 (+) True G2091507
TU2392535 lncRNA upstream 34628 50924526 ~ 50928521 (+) True G2091505
TU2392536 lncRNA upstream 35041 50925470 ~ 50928108 (+) True G2091506
TU2392534 lncRNA upstream 37205 50924526 ~ 50925944 (+) False G2091505
TU2392406 lncRNA upstream 80390 50864597 ~ 50882759 (+) True G2091411
TU2392611 lncRNA downstream 107416 51071042 ~ 51072926 (+) True G2091577
TU2392613 lncRNA downstream 109433 51073059 ~ 51074282 (+) True G2091578
TU2392626 lncRNA downstream 123637 51087263 ~ 51092572 (+) True G2091588
TU2392889 lncRNA downstream 147139 51110765 ~ 51111186 (+) True G2091801
TU2392887 lncRNA downstream 148105 51111731 ~ 51112173 (+) True G2091800
XM_036964625.1 mRNA upstream 112690 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 486541 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 509894 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 509894 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 509894 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 509894 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 509894 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 609982 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 875458 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1174344 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1628966 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1639546 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 406138 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 406308 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 506262 51469888 ~ 51470391 (+) True G2091960

Expression Profile