RNA id: TU2392613


Basic Information

Item Value
RNA id TU2392613
length 425
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G2091578
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51073059 ~ 51074282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACAACCAGGTGGTAAAGTgtagagctgtctgaacagaacaaCCAGGTGTTAAAGTgtagagctgtctgaacagaacaaccaggtggtaaagtgtagagctgtctgaacagaacaaCCAGGTGTTAAAGTgtagagctgtctgaacagaacaaccaggtggtaaagtgtagagctgtctgaacagaacaaCCACGTGGTAAAGTgtagagctgtctgaacagaacaaccaggtggtagagctgtctgaacagaacaaccaggtggtagagctgtctgaacagaacaaCCAAATGgtagagctgtctgaacagaacaaCCAGGTGGTAAAGTGTAGAGCTGTCTGAACATAGACGTGGAAACAGATAAAATACCTGGTTTAACCAAACAACATCTGTTCTCCTTGGGAAGGGTTCATCATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392611 lncRNA upstream 133 51071042 ~ 51072926 (+) True G2091577
TU2392567 lncRNA upstream 109433 50963149 ~ 50963626 (+) True G2091533
TU2392538 lncRNA upstream 141435 50926088 ~ 50931624 (+) True G2091507
TU2392535 lncRNA upstream 144538 50924526 ~ 50928521 (+) True G2091505
TU2392536 lncRNA upstream 144951 50925470 ~ 50928108 (+) True G2091506
TU2392626 lncRNA downstream 12981 51087263 ~ 51092572 (+) True G2091588
TU2392889 lncRNA downstream 36483 51110765 ~ 51111186 (+) True G2091801
TU2392887 lncRNA downstream 37449 51111731 ~ 51112173 (+) True G2091800
TU2392897 lncRNA downstream 45451 51119733 ~ 51120085 (+) True G2091808
TU2392909 lncRNA downstream 71846 51146128 ~ 51251370 (+) False G2091817
XM_036964625.1 mRNA upstream 222600 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 596451 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 399238 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 399238 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 399238 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 399238 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 399238 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 719892 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 985368 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1284254 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1738876 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1749456 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 295482 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 295652 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 395606 51469888 ~ 51470391 (+) True G2091960

Expression Profile