RNA id: TU2392887


Basic Information

Item Value
RNA id TU2392887
length 443
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2091800
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51111731 ~ 51112173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacattagtagtgaactattttctcgtcccacattagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacattagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcttcccacagtagtagtgaactattttctcgtcccacagtagtagtgaactattttctcgtcccacag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392889 lncRNA upstream 545 51110765 ~ 51111186 (+) True G2091801
TU2392626 lncRNA upstream 19159 51087263 ~ 51092572 (+) True G2091588
TU2392613 lncRNA upstream 37449 51073059 ~ 51074282 (+) True G2091578
TU2392611 lncRNA upstream 38805 51071042 ~ 51072926 (+) True G2091577
TU2392567 lncRNA upstream 148105 50963149 ~ 50963626 (+) True G2091533
TU2392897 lncRNA downstream 7560 51119733 ~ 51120085 (+) True G2091808
TU2392909 lncRNA downstream 33955 51146128 ~ 51251370 (+) False G2091817
TU2392908 lncRNA downstream 135297 51247470 ~ 51251370 (+) True G2091817
TU2392959 lncRNA downstream 166233 51278406 ~ 51279940 (+) False G2091865
TU2392961 lncRNA downstream 166233 51278406 ~ 51279940 (+) True G2091865
XM_036964625.1 mRNA upstream 261272 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 635123 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 361347 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 361347 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 361347 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 361347 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 361347 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 758564 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1024040 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1322926 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1777548 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1788128 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 257591 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 257761 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 357715 51469888 ~ 51470391 (+) True G2091960

Expression Profile