RNA id: TU2392959


Basic Information

Item Value
RNA id TU2392959
length 1360
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G2091865
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51278406 ~ 51279940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgtccatacagtttattaggtaatgataataataacatGTAGCTGTTGGGTTAGCTGTGCACAGCAGTCACTGTTTTACATAACAACATTGTTCTCACAGCATATGACATTAATTTGAAACAAATGCCGTTATTTGTCTAGTAAATAGAAAATCAACAGCACTACTCACTAAACAATCCCCCAAAAGCTGAATAGAAGACAGTGACATAGTGTGTGAGGAAaactatactaactatataaGTGCTGCAATGTTATTGTTTGGACCAGtcccctgcagacagacagagagatgactAAACAAGCTTTATACTGTACCTAATGGCAACAGCTGTCAAATACATGAACATAGATTAGTGTACTTGAACATATTCAACATGTGTCTATGTATGTCTGTCTTGATTTGTTAAAACCCCTGCTAAATAGCTCCATGTAAAAGCAAGTCAAATATAGTAAGGCAGCTTTCAGAGCCATGTATAATCAGATCAGTGTGTAattagcagagtagagtagagtagattagAGTAGAGCAGGCCACTAGCTTTTATTTGACATCACTCAGCAAAACACATTTAGATCCAATTGGAAAAAGGGGACAATGTAGGGGACTAGAAGACAATGTAGGGGACTAGGTGACAATGTAGGGGAATAGGTGACAACGCAGGGTGGCAAAGTAGGGTACAACGTAGGGGACTACGGACAACGTAGGGGACTAGGGGACAACGTAGGGGACTACGTGGGgggcagtagtgtgtgtgtcagctgtcAGAGGGTTATACTCTCAGCTCCAAAGGGTGGGTTAATGTAGTCTCTCTATACATCAGATCCTTTCTGCCTGCGCTTGGAGGGGGGCACCAGGCGTGCTGGCAGCTCGGGTGGCAGACCATGCCCCTCTAACTTCACCTCGATCAGGTGGCTGGCCAGGGCAAACTCCTCGTCATCCAGCATGCCATCTCGGTCCACATCCGACAGCTTCCAGATCCTCCCCAGGACGGAGTTTGGCAGCCGGGTGCTCACCATCCAGTCCCTGGCCTTGGTGCCACTCAGCTTGCCCTCGTTGGGCGCCAGGTTGTAGAAGATCTCGTCATATTTGGGCTTATCCTTGGTCACCACCCAGGCCATCTCGCCCCCATCCTCGCCCTCCTTCTCCATGTCACCGAATGGGTCGTTCACCACGAAGGGCCCGGCACGGGTTCCCAGGAAGGCCCCCCCCTGTACCCCTGGCTGCTCCCCCAGGTTGATCTCCTCCTGGCGCAGCAGGGGCATCAGCTTGGCGATGTCGGATGCCAGCAGCTCGTCCAGAGCAGCCATCAGGGACGGTTTCAGGGGCTTGAACTTACTGAAGTCATGGGTCAACAGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392909 lncRNA upstream 27036 51146128 ~ 51251370 (+) False G2091817
TU2392908 lncRNA upstream 27036 51247470 ~ 51251370 (+) True G2091817
TU2392897 lncRNA upstream 158321 51119733 ~ 51120085 (+) True G2091808
TU2392887 lncRNA upstream 166233 51111731 ~ 51112173 (+) True G2091800
TU2392889 lncRNA upstream 167220 51110765 ~ 51111186 (+) True G2091801
TU2392979 lncRNA downstream 35950 51315890 ~ 51316246 (+) False G2091883
TU2392980 lncRNA downstream 35950 51315890 ~ 51316464 (+) True G2091883
TU2392998 lncRNA downstream 80867 51360807 ~ 51361385 (+) True G2091898
TU2393000 lncRNA downstream 82731 51362671 ~ 51362897 (+) True G2091900
TU2393001 lncRNA downstream 83200 51363140 ~ 51363361 (+) True G2091901
XM_036964625.1 mRNA upstream 427947 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 801798 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 193580 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 193580 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 193580 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 193580 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 193580 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 925239 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1190715 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1489601 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 1944223 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 1954803 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 89824 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 89994 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 189948 51469888 ~ 51470391 (+) True G2091960

Expression Profile