RNA id: TU2393000


Basic Information

Item Value
RNA id TU2393000
length 227
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2091900
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51362671 ~ 51362897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttggccttgtgctgttgactgtgcccaaaaatgcttgtaccatgttttgtgctgctaccattttggtgttatgttgtgttgctgccatgttgtgttgctactgtaccatgctgtgttgtcatgtgttgctgccttgctatgttgtcttaggtctcgatgtagtgttgtctctcattgtgatgtgtattttgtcctatatttatattgcatttattttttatcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392998 lncRNA upstream 1286 51360807 ~ 51361385 (+) True G2091898
TU2392980 lncRNA upstream 46207 51315890 ~ 51316464 (+) True G2091883
TU2392979 lncRNA upstream 46425 51315890 ~ 51316246 (+) False G2091883
TU2392959 lncRNA upstream 82731 51278406 ~ 51279940 (+) False G2091865
TU2392961 lncRNA upstream 82731 51278406 ~ 51279940 (+) True G2091865
TU2393001 lncRNA downstream 243 51363140 ~ 51363361 (+) True G2091901
TU2392993 lncRNA downstream 1303 51364200 ~ 51369536 (+) True G2091894
TU2393002 lncRNA downstream 8637 51371534 ~ 51371801 (+) True G2091902
TU2393006 lncRNA downstream 17606 51380503 ~ 51380967 (+) True G2091906
TU2393008 lncRNA downstream 20369 51383266 ~ 51383666 (+) True G2091908
XM_036964625.1 mRNA upstream 512212 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 886063 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 110623 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 110623 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 110623 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 110623 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 110623 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 1009504 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1274980 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1573866 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 2028488 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 2039068 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 6867 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 7037 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 106991 51469888 ~ 51470391 (+) True G2091960

Expression Profile