RNA id: TU2392993


Basic Information

Item Value
RNA id TU2392993
length 3051
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G2091894
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51364200 ~ 51369536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttttttaaaagtgtCATTAtacacaataaatacaatacaaaattaaTCTAATACTATACTTCAAATTCTCTTTTTTTGTACATTATTGTTCATTTGTCCATGTTTCTGCGTTTGAATTGTCCAACAGGCTTTGAagatggggaacagaggggcgaaggagagaataagatagggatggggaacagtggggcgaaggagagaataagatatggatggggaacagaggggcgaaggagagaataagatatggatggggaacagaggggcgaaggagagaataagatagggatggggaacagaggggcgaaggagagaataagatagggatggggaACAGAGGGGCGAAGGAGAGAATAAGATagggatggggaacagaggggcgaaggagagaataagatagggatggggaacagaggggcgaaggagagaataagaagggatggggaacagaggggcgAAGGAGAGAATAAGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGTGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGTGACAGAGGGGCAAAGGAGAGAATAAGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGTGACAGAGGGGCGAAGGAGAGAATAAGATAGGGATGGGGAACAGTGACAGAGGGGCAAAGGAGAGAATAAGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATACGATAGGGATGGGGAACAGGGACAGAGGGGCGAAGGAGAGAATAAGAGATTTGATAAATGTGGCcatgttaactgaaatgcatccTAGCCTACTGAACGTCAGCCATGGTCAGGACAACCAGAGGACATGTTTTAACATGTAAAAGTGATTTCATAATTACATGTTTCATTGTCATTACAGTAATAGGGTTCTTAAAGAGAGCACCAGCCTCAACAGTCAACCAGAAAGTCAACCAACCACCTCAACATTTAACCATACTACAACATGTATTTGAAAGAAACACAACCTAACCATCTAGCTAAGAAGAATTGAACAGCTGGAACCAGAAAGTGTATTTGTGGTGATGATAGAAGTCAGAATATGGAAAAAGAGACGTGGATCTGTAGTGATGAAGAGATCGCTATAACAAGCCTCTCCTCCGTGTGTGGTTTACCTACTGAAGTAAGGCTTTAGGGAGTTTTATGCAGTCTTGCCTTGATTATATTCAGTAGAGCAAACatttagtcacagaaaaacaaatCTCTTATTATTGGACAAGTTCCTGTAGTTTTCTCCTGTTTTAtacctactgaacatgacccaggtctTATTTGTtatacagacaggcaggcagcagctATAACATGATGACTAAGGAATGGAATACAGTGGGAATGAATAAGGAAAACCTTCAATAATACAAAAGAACTGGAGACAAATGAATCAAACTGATGATTGAGCGTAGTTGAGAGAGCAGAGGGTACTGCCACAGAGTAAAGCATACCTTTTTACAGAGAGtcatcaccatccatccatccagtgaCTGTGAGCATTGTGTCATGTTGTAAAGTAAACAACATTCAGATGGACAAACAAGGTCAACTGAGCTCGTCAGAGCAGTGAGAGTTATTCCGCTCTCCTCTCTTCAGTCCCAACTGTTGTATGTGTTATCTGCTGTGAGTCTGTGGCACCAGTCCTCTGCCTCCAACCTGAGAGTGATGGGCCAGAGAGGATGAAGATGAAGAAGAGACTGAGGGTCTGTATGTATGTGAGGAGGGCTGGGGGGCCGTGGGTCGctggctgtggtggtggtgtggcctGATGGAGCCCCCTTTGGCTCTGCGCGGTGTGGGCCCCTGGGCCTGGCCCTGCAAGTTGAGGATGGTGTCGATGGCACACTGCAGGTGCTCGTTAAGAGACTCATCGTGTGGCGGGGAGCCGGAGGAGAAGGAGGCGTTGTCCATGACAGGAGAGTCTGACTTACAGCGCTTAGCAGGAAGTGATGAGTCTCTGTAACAAGAAGTGTCTGGCGGCGAGGAAGGGGGCCCAGGGGCATGCTGGTCCATTCTGAACGTATCACCTCCACCAGACCTCTGGTGGTTTTTACTGCTCACCCTCTTATACCTCCCCAtgtccgcccctctgtcccaatgatccccttctctccccctctcctcctctctgtctgagaGATGCTGCTGGGTGTTTGTGATGCCCTGCACTAGGccaggagaggagggataggagTTCCCCAGCCTCAGGGCCTCCCGGCTGAGCTCTGTGTGGGAGCCCCCCTCCCTGGGGctgcctcctctcttctccagctTCATGCTGGTGATCACTGTCCCctctgaggagggagagggtgaggagggagaaTTGGGGGGCGAGGGGGAGGGACGGGGGTACGGGacactgtctcctcctcctcccggtACACCCGGTCGGACGCGGGGGCTGATGTTCTCCCGGTAAGTCTTCCGTAGAGGCAGGCGGCAGGTGGTCTGAGGGGAAGTGGCCGTGGAGGCGGGGTTACGCTTGACTCCACCCACATTGTGATGTTCTAACGCTCCGTTCATCTGAGCCGTGGAGGAAGATGCGGGCGCTGTGACTCTCTGTGGGCTAGGGTTCGCCTGTGTGGTTGCTATGAAGACCATTGCTGAGGAGGCTGTGTTACAGCTAGGGGGAGGAGTCCTAATGACAGTTATAGAAGGCGGCGTGGCTAGTGCTGCTGTTTGGGCTTTAGGGAGTGCCGGCGCCGGTTGAGGTCGTGTGGTAGGGAGTGCTGGCGTCGGTTGGGGTCGTGTGGTAAGGAGTGCCGGCGTCGGTTGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2393001 lncRNA upstream 839 51363140 ~ 51363361 (+) True G2091901
TU2393000 lncRNA upstream 1303 51362671 ~ 51362897 (+) True G2091900
TU2392998 lncRNA upstream 2815 51360807 ~ 51361385 (+) True G2091898
TU2392980 lncRNA upstream 47736 51315890 ~ 51316464 (+) True G2091883
TU2392979 lncRNA upstream 47954 51315890 ~ 51316246 (+) False G2091883
TU2393002 lncRNA downstream 1998 51371534 ~ 51371801 (+) True G2091902
TU2393006 lncRNA downstream 10967 51380503 ~ 51380967 (+) True G2091906
TU2393008 lncRNA downstream 13730 51383266 ~ 51383666 (+) True G2091908
TU2393009 lncRNA downstream 14654 51384190 ~ 51384457 (+) True G2091909
TU2393013 lncRNA downstream 31642 51401178 ~ 51402095 (+) False G2091911
XM_036964625.1 mRNA upstream 513741 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 887592 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 103984 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 103984 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 103984 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 103984 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 103984 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 1011033 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1276509 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1575395 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 2030017 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 2040597 49323169 ~ 49323603 (+) True LOC118944717
TU2392994 other downstream 228 51369764 ~ 51370763 (+) False G2091895
TU2392995 other downstream 398 51369934 ~ 51370763 (+) True G2091895
TU2393075 other downstream 100352 51469888 ~ 51470391 (+) True G2091960

Expression Profile