RNA id: TU2392994


Basic Information

Item Value
RNA id TU2392994
length 1000
RNA type TUCP
GC content 0.65
exon number 1
gene id G2091895
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51369764 ~ 51370763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCGTGTGGTAGGGAGTGCCGGCATCGGTTGGGGTCGTGTGGTAGGGAGTGCCGGCGCCGGGTGCGGCAGGGTGGTAGGGAGTGCCGGCGCCGGGTGGGGCAGGGTGGTAGGGAGTGGCGGCGCCGGGTGGGGCAGGGTGGTAGGGAGTGGCTGTGGCTTAGGGTTGGGTGTGGATGGTGTGTGGACCGGGTCGAGGGCGGTGTTATGCACCACCTTACTAAACCCCGCCTCCTGCTTGATCTTGAGCTTCAAGCCGATGCGTGGGCGGGCGGCGTACGTCTTCATGGGGGGTTTACTGGTCCTCCGGGGGAGAGTATCATCATCCTCAGCTGGACGAAAGGAGGAGAAAGGGCGGTGGGGTGAGTGacgggagggaggtggaggagcgcGGCTGAAGGAGGAGCTGTGACTCTGGGTGTCGGCTGTctgtctaacccctgaccccgGCCTGGCCACAGGAGCTGGGGAGCTGGACCAGGAGACAGACGCCCCCGCTCCTCCCTGCTTTATCACCAGCTTGGTGGAGGGGAAGTGGTCTGGGACCGGTGTTGGGGCTGAAGCAGGGGCAACACCACTCCTTACGGGGCTGGGCTCAAGCcactggggctgaggctgggacagGGGCTGAGGATGGGGCTGGGGTTCAGGAtggggctgggacaggggctGAGGATGAGGCTGGGGTTCAGGATGGGGCTGGGACAGGGGTTCAGGATGGAGCTGGGACAGGGGCTGAGGATGAGGCTCGGACTGGAGCTGGGACAGGGGCTGAGGATGAGGCTCGGAATGGAGCTGGGGCTCGGAATGGAGCTGAGGATGGGACAGGGGCTGAGGATGGGACAGGGGCTGAGGCTCAGGATGGGGCTGAGGCTTATGGTGGGGCTGAGGCTGTAGCTGAGGCTTATGGTGGAGCTGGGACTGTAGCTGAGGCTTGGACTGGGCCATGTTGGCAGCTCCACTCTCAATCTCCATCATCCTTGAGTTGGCCACATactcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392993 lncRNA upstream 228 51364200 ~ 51369536 (+) True G2091894
TU2393001 lncRNA upstream 6403 51363140 ~ 51363361 (+) True G2091901
TU2393000 lncRNA upstream 6867 51362671 ~ 51362897 (+) True G2091900
TU2392998 lncRNA upstream 8379 51360807 ~ 51361385 (+) True G2091898
TU2392980 lncRNA upstream 53300 51315890 ~ 51316464 (+) True G2091883
TU2393002 lncRNA downstream 771 51371534 ~ 51371801 (+) True G2091902
TU2393006 lncRNA downstream 9740 51380503 ~ 51380967 (+) True G2091906
TU2393008 lncRNA downstream 12503 51383266 ~ 51383666 (+) True G2091908
TU2393009 lncRNA downstream 13427 51384190 ~ 51384457 (+) True G2091909
TU2393013 lncRNA downstream 30415 51401178 ~ 51402095 (+) False G2091911
XM_036964625.1 mRNA upstream 519305 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 893156 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA upstream 893156 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA upstream 893156 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA upstream 893156 50467095 ~ 50476608 (+) True LOC110508133
XM_036965435.1 mRNA downstream 102757 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 102757 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 102757 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 102757 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 102757 51473520 ~ 51509546 (+) False LOC110508131
TU2392024 other upstream 1016597 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1282073 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1580959 49785127 ~ 49788805 (+) True G2090508
TU2390858 other upstream 2035581 49333447 ~ 49334183 (+) True G2090103
TU2390856 other upstream 2046161 49323169 ~ 49323603 (+) True LOC118944717
TU2393075 other downstream 99125 51469888 ~ 51470391 (+) True G2091960

Expression Profile