RNA id: TU2393002


Basic Information

Item Value
RNA id TU2393002
length 268
lncRNA type intronic
GC content 0.53
exon number 1
gene id G2091902
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51371534 ~ 51371801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtaacagtcagtatctggtgtggccaccagctgcattaatactgcagtgcatctcctcctcatggactgcaccagatttgacagttcttgctgtgagatattaccccactcttccaccaaggcacctgcaagttcccggacatttctggagggaatggccctagccctcaccctgagatccgggctcttcgctgcccatggcagaacactgacattcctgtcttgcaggaaatcacgcacagaacgagcagtatggctggtggcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2392993 lncRNA upstream 1998 51364200 ~ 51369536 (+) True G2091894
TU2393001 lncRNA upstream 8173 51363140 ~ 51363361 (+) True G2091901
TU2393000 lncRNA upstream 8637 51362671 ~ 51362897 (+) True G2091900
TU2392998 lncRNA upstream 10149 51360807 ~ 51361385 (+) True G2091898
TU2392980 lncRNA upstream 55070 51315890 ~ 51316464 (+) True G2091883
TU2393006 lncRNA downstream 8702 51380503 ~ 51380967 (+) True G2091906
TU2393008 lncRNA downstream 11465 51383266 ~ 51383666 (+) True G2091908
TU2393009 lncRNA downstream 12389 51384190 ~ 51384457 (+) True G2091909
TU2393013 lncRNA downstream 29377 51401178 ~ 51402095 (+) False G2091911
TU2393015 lncRNA downstream 29377 51401178 ~ 51404738 (+) True G2091911
XM_036964625.1 mRNA upstream 521075 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 894926 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 101719 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 101719 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 101719 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 101719 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 101719 51473520 ~ 51509546 (+) False LOC110508131
TU2392994 other upstream 771 51369764 ~ 51370763 (+) False G2091895
TU2392995 other upstream 771 51369934 ~ 51370763 (+) True G2091895
TU2392024 other upstream 1018367 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1283843 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1582729 49785127 ~ 49788805 (+) True G2090508
TU2393075 other downstream 98087 51469888 ~ 51470391 (+) True G2091960

Expression Profile