RNA id: TU2393042


Basic Information

Item Value
RNA id TU2393042
length 344
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2091932
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51440182 ~ 51440525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgaactgtgaagagacctctggttccatgtcttgtgttgtaccgatgagtgtctgaactgtgaagagacctctggttgcatgtcttgtgttgtaccgatgagtgtctgaactgtgaagagacctctggttccatgtcttgtgttgtaccgatgagtgtctgaactgtgaagagacctctggttgcatgtcttgtgttgtaccgatgagtgtctgaactgtgaagagacctctggttccatgtcttgtgttgtaccgatgagtgtctgaactgtgaagagacctctggttccatgtcttgtgttgtaccgatgagtgtctgaactgtgaaAAGACCTCTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2393027 lncRNA upstream 16157 51423741 ~ 51424025 (+) True G2091917
TU2393024 lncRNA upstream 22441 51416476 ~ 51417741 (+) True G2091914
TU2393023 lncRNA upstream 22964 51416476 ~ 51417218 (+) False G2091914
TU2393017 lncRNA upstream 35152 51402369 ~ 51405030 (+) True G2091912
TU2393015 lncRNA upstream 35444 51401178 ~ 51404738 (+) True G2091911
TU2393044 lncRNA downstream 5299 51445824 ~ 51446091 (+) True G2091934
TU2393047 lncRNA downstream 9707 51450232 ~ 51450569 (+) True G2091937
TU2393048 lncRNA downstream 10429 51450954 ~ 51451235 (+) True G2091938
TU2393052 lncRNA downstream 12426 51452951 ~ 51453187 (+) True G2091942
TU2393053 lncRNA downstream 13229 51453754 ~ 51453986 (+) True G2091943
XM_036964625.1 mRNA upstream 589723 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 963574 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 32995 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 32995 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 32995 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 32995 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 32995 51473520 ~ 51509546 (+) False LOC110508131
TU2392994 other upstream 69419 51369764 ~ 51370763 (+) False G2091895
TU2392995 other upstream 69419 51369934 ~ 51370763 (+) True G2091895
TU2392024 other upstream 1087015 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1352491 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1651377 49785127 ~ 49788805 (+) True G2090508
TU2393075 other downstream 29363 51469888 ~ 51470391 (+) True G2091960

Expression Profile