RNA id: TU2393059


Basic Information

Item Value
RNA id TU2393059
length 266
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G2091949
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 51458893 ~ 51459158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacttattctatgcctctatggtacagtttttattgctatctaactgtacggttagtccttcaatttcctttgttaatatggactcttgatctaaattgcttttgttttatagatgagtactgaattgcatggcctctaaaggaacatttaaaagtgtcccatacaataaggggatctgctgtacctatgttatgtctgaaaaagtcagttataaattcttctgtcctagttctaaacaatttatcatctagtaggctttgattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2393058 lncRNA upstream 316 51458322 ~ 51458577 (+) True G2091948
TU2393053 lncRNA upstream 4907 51453754 ~ 51453986 (+) True G2091943
TU2393052 lncRNA upstream 5706 51452951 ~ 51453187 (+) True G2091942
TU2393048 lncRNA upstream 7658 51450954 ~ 51451235 (+) True G2091938
TU2393047 lncRNA upstream 8324 51450232 ~ 51450569 (+) True G2091937
TU2393062 lncRNA downstream 2276 51461434 ~ 51461644 (+) True G2091952
TU2393087 lncRNA downstream 55039 51514197 ~ 51514413 (+) True G2091972
TU2393269 lncRNA downstream 65074 51524232 ~ 51524540 (+) True G2092135
TU2393276 lncRNA downstream 67843 51527001 ~ 51527298 (+) True G2092139
XM_036964625.1 mRNA upstream 608434 50665719 ~ 50850459 (+) True LOC110507254
XM_036965521.1 mRNA upstream 982285 50465883 ~ 50476608 (+) False LOC110508133
XM_036965435.1 mRNA downstream 14362 51473520 ~ 51509546 (+) False LOC110508131
XM_036965436.1 mRNA downstream 14362 51473520 ~ 51509546 (+) False LOC110508131
XM_036965437.1 mRNA downstream 14362 51473520 ~ 51509546 (+) False LOC110508131
XM_036965439.1 mRNA downstream 14362 51473520 ~ 51509546 (+) False LOC110508131
XM_036965440.1 mRNA downstream 14362 51473520 ~ 51509546 (+) False LOC110508131
TU2392994 other upstream 88130 51369764 ~ 51370763 (+) False G2091895
TU2392995 other upstream 88130 51369934 ~ 51370763 (+) True G2091895
TU2392024 other upstream 1105726 50352368 ~ 50353167 (+) True G2091093
TU2391495 other upstream 1371202 50082063 ~ 50087691 (+) True G2090638
TU2391337 other upstream 1670088 49785127 ~ 49788805 (+) True G2090508
TU2393075 other downstream 10730 51469888 ~ 51470391 (+) True G2091960

Expression Profile