RNA id: XM_036966586.1


Basic Information

Item Value
RNA id XM_036966586.1
length 2929
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110508941
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31138086 ~ 31169294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGCGGCGCTCCACAGATCCTTCAGTGTAGTGTTCCGCAGCGATAGGCAGGGGTGCTATTCCGTCATGTGATTCTGCTTTAGTCCTTCGAAGTTGAAAGGCAAGCAAGTCAGTGCGGGGCTAGCCTTCCTTAATCTTGGTTGCTGGAGTACTAGCTAGATGCGGTGACTTTCTTCTCGATTTCTTACTCGTGATTTTTCTTCAACTTTTTAAGATGGCCGGGGCAATTATTGAAAACATGAGCACCAAAAAGTTGGTGATCGTAGGAGTGATTCTGCTTTTATTCCAAGCGTTTTCTTTTATGGTCGGAGGCTTGATTGCTCCCAGCCCCACCACAGCAGTCCACTACCTGGCTACCAAATGTGTGGACACGGTCAAACACCATCAGAGCACCAAATGGTTCATGCCCTGGGGCCCTAACCAGTGTGACAAGATCCGGGACTTTGATGAGGCCATGGCCAAGAAGATCGAGGCAAACAACATTGTATTTGCCGTCCATATCCCCCTGCCCAACAaagagatgagcccctggttccagttTATGCTGGTCATCCTACAGTTTGACATTGCCTTCAAGATGTACAACCAGATAGAGGATGGAGCACTAGCCACCATTGACGTGGGTTTGGCCTACAGAGATGACACGCTCAGTGAGTGGACAGAGATGGCCCACTCCATAGAACAGAGGAAGCTCAGCTGCAACTTCACCACCACCAAGACGTATGAGAACGAGGGGCGCTACTATGAGTGTGACCTGCTGCCCTTCATGGAGCTGGGCAACGTGGCCCACAAGTACTACCTTCTCAACATCCGCCTGCCTGTCAGCGAACGCAAGAAGATCAACATGGGCATCGGCGAGATCAAGGACATCCGTCTGGTGGGTATCCATCAGAACGGCGGTTTCACCAAGGTGTGGTTCGCCATGAAGACCTTCCTCACACCAAGCATCCTCATCATCATGGTGTGGTACTGGAGACGCATCACCCTGATGACGCGACCCCCTGTGCTGTTGGAAAAGGTGATCTTTGCCCTGGGCTTGTGCATGACCTTCATCAACATCCCGGTGGAGTGGTTCTCTGTGGGCTTCAACTGGACCTGGATGCTGCTGTTCGGGGACATCCGGCAGGGCATCTTCTACGCCATGCTGCTCTCCTTCTGGATCATCTTCTGTGGAGAGCACCTCATGGACCAGATGGAGAGGAACCATTTCTCAATCTACTGGAAGCAGGTGGGACCCATTGTCTTCGGCTCCTTCTGCCTGTTTATCTTCGACATGTGTGAGAGGGGAGTCCAGTTGAAGAACCCTTTCTACAGTATTTGGGCTTCCGACGTGGGGACTGAGTTGGCTATGGCGTTCATCATTGTGGCGGGGATCTGTGCCTGTCTCTACTTCCTCTTCCTGTGCTTCATGGTGTTCCAAGTGTTCCGCAACATCAGTGGGAAGAGGTCCTCCCTGCCCGCCATGTCCAAGGCCAGACGCCTGCACTAtgagGGCCTTATCTTCCGGTTCAAGTTCCTCATGTTGGTCACTCTTACCTGCGCTGCAATGACTGTCATCTTCTTCATCATCAGTCAGGTGAATGAGGGCCACTGGCACTGGGGAGACTACACGGTGCAGGTGAACAGTGCCTTCTTCACGGGAATCTACGGCATGTGGAACCTCTACGTGTTCGCCATCATGTTCCTGTATGCTCCCTCACACAAACGCTACGGAGACGAGCAGTCCAGCGGAGACGCAGGAGCCAGTGGCGAGGACATCCAGCTgaccaccaccatcacccacGTGGACGGACCCACCGAGATCTACAAGATGACGGGCAAGGAGGCCCAAGAgtagcgccccccccccccccttgacatCAAACCACCTACAAACACACCTCCCTCAAACCTGGACGGTGCTTCATTTAGCCCTGTTACCCATGTGCCCCACATTGTCCCAGAAGTTCAAAAGCAACTTTATCTGTAGCCCTTTAGTCCTTTCATTTCATTGCAGACATGGGGCTAGATTGTATATTCATTTTTGACATTTGACATAGTCTGTTAACTCTGTTTGTAATGTTGGTGTTGAACAACTGTACTCTTATGAAGTCCAGGTTGTGAAAATCTGATTTGCGATGGAGTGGAAGGATGTAGAACAGCATCTGTTGGTCATGAGGTAGTTGGGGAGGGAACAAAACACTCCAGGTAGATGTTGTCTTCACAATTCTAGGATCAGCATACCATTCCTCAAATCCTAAACCAACCCATTAGGGGTAAAGTGCAAATCTGAAATTAGATCAGTGTCCAGTGGCAACGGCATCCAACTACAGGAAAAACATTGTGGGCTTTCAAGGCACTATATTGTGGCCTAACTGGTTGCCTCACTGAAGACAACATTACTTGGTTCTTTAGAGAGAACTACATTTGGATGACTGCTGTTTTTGGCACTCCGCCTCTGCAGTTTTAGATTGAAACAACCAGTAGGACAAATAAGTGTATGTCAATGGTACAAGGTCCAAGATGACCACTTTCTGAAGATCTGTCAAAAGAAAGCATATCTCTGCAAGTTGTCAGTAATATCTTTGTCTTTTTTGTCACTTCTGTCCGCACTCACGTTCAGCTGTACACATCCATGGAACTTTCTAGAGACTACTGTGTTCTCTTGTCTATCACTCTCCCAAGTGGGGGGATAATACCTTTTTGtattgtgggggaaaaaaatgacAAACCACAGGGCCGTTTTGGGAAACGCCAAGTTCATTATGTTACgatgtagatatatatattttataaagtGCTTATTTTCAACTGTATGAAAGATTTGCATATGCTGTATCACTGTCTGTtggcaaaaataataataattgagatTCGAAGATGACTATGACGTGGTAGTGTAGTAGTTTTGTGCTTTTTATGctaaattaaataaaatgtttactTTATG

Function

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432830 lncRNA downstream 1995 30995158 ~ 31136091 (-) False G2127817
TU2432829 lncRNA downstream 1995 31084190 ~ 31136091 (-) True G2127817
TU2432678 lncRNA downstream 151972 30985073 ~ 30986114 (-) True G2127673
TU2432641 lncRNA downstream 206620 30924247 ~ 30931466 (-) True G2127637
TU2432617 lncRNA downstream 253301 30884465 ~ 30884785 (-) True G2127615
TU2433259 lncRNA upstream 49768 31219062 ~ 31219909 (-) True G2128197
TU2433285 lncRNA upstream 72873 31242167 ~ 31242441 (-) True G2128215
TU2433262 lncRNA upstream 75828 31245122 ~ 31281683 (-) False G2128200
TU2433265 lncRNA upstream 75828 31245122 ~ 31283855 (-) True G2128200
TU2433267 lncRNA upstream 76981 31246275 ~ 31286088 (-) True LOC110508945
XM_021589863.2 mRNA downstream 1919 31084315 ~ 31136167 (-) True LOC110508940
XM_021589861.2 mRNA downstream 133797 30995095 ~ 31004289 (-) True LOC110508938
XM_021589860.2 mRNA downstream 157634 30978719 ~ 30980452 (-) False LOC110508937
XM_036966461.1 mRNA downstream 157773 30978983 ~ 30980313 (-) True LOC110508937
XM_021589856.2 mRNA downstream 230111 30905879 ~ 30907975 (-) True ptger4c
XM_036966574.1 mRNA upstream 4633 31173927 ~ 31214079 (-) True LOC110508942
XM_036965889.1 mRNA upstream 84639 31253933 ~ 31254937 (-) True LOC118944807
XM_021589866.2 mRNA upstream 89775 31259069 ~ 31280002 (-) False LOC110508943
XM_021589871.2 mRNA upstream 115852 31285146 ~ 31304046 (-) False LOC110508945
XM_021589867.2 mRNA upstream 115852 31285146 ~ 31305210 (-) False LOC110508945
TU2432521 other downstream 431541 30705085 ~ 30706545 (-) True LOC110508928
TU2432439 other downstream 582899 30553589 ~ 30555187 (-) True G2127455
TU2432121 other downstream 703232 30434435 ~ 30434854 (-) True G2127177
TU2432085 other downstream 736279 30401213 ~ 30401807 (-) True LOC110508917
TU2430565 other downstream 2014344 29118684 ~ 29123742 (-) True LOC118944842
TU2433286 other upstream 74797 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 149989 31319283 ~ 31320623 (-) False G2128242
TU2433312 other upstream 150047 31319341 ~ 31323364 (-) False G2128242
TU2433313 other upstream 150047 31319341 ~ 31323364 (-) True G2128242
TU2433533 other upstream 542314 31711608 ~ 31737492 (-) True LOC110508968

Expression Profile