RNA id: XM_036966033.1


Basic Information

Item Value
RNA id XM_036966033.1
length 6365
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110508952
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31343995 ~ 31351517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAAGTTACAGCTAACTGTCTTATTACGTTCTGTCATGAGCACGGACACCTAATGTCACTTATTCGACAGATGGGAAGAGTGTCAAAGCACAGACCTCTGCAGAGGAAGCAAGAATGtattttcaccccccccccccccccccctgtagaaGAGAGCTCTGCAGGTGGTGGAGTGTCTCTTGGAGGATAGCGTACTGGAGGACTTCCTGGTTGACTGTGAAAGCTTGATCACTTCTGCCAATTACAAAGACAGTTGAGGAGAGATCTATTGTGAAGCTGTGTGGCTATTCTGTCTGTTCAAATAAACTGGGCTAGTTAAACATTTCCACCAACACCAATAAAGTCAATGACATTACAGAACGCAAGTCCTTCTGCAGTAATTCTGCTACAAAGCCTCCAAGTCATTTGAGCTGCAGATTTCAAAGAGCCCTCTATGATTGAGGCAGCACGAGAGcggtagcactggagaggaggagaggctgacTGAGGTGTTTCAGAGAGGAGGATGTGAGGAACCTTCCCCTGTACTCTGTGGCCCCAGAGAACCCCAGATGATCCCATACAGCCGGTCACAGCGACACAGAATAGCACTTTGTTTCCAGCGTAGTCTCCCAGCAACAGTTACCCAGGGTGCACTGGGTCAGTCTGCCCAAGCACACCAacgaaggggaggggagggaacgagaagagggagagaaggtcgGGAGGGAAGGACACAAAGatgccaaaacaaacaaacaaggctGAAGACAAGAAGGAGGAGAATACAGAAGAATCACAGAAAGAACCAACAAAGACAATCAATGACATAGATGGACCCCAACAACACACAACAGATACAAACCACCCCAGTGAGCAGCAGCCTTTCCTGGAAGAGAGAGGCTCACCAGAGGGCCGGTCTATGGAGGATGCCGCAGCACTACTGAGCCAAGTCACAATGCAGGATAGAGATCCAGTCACGGTTACATCTTCTGTACTAACAACCGTCAACACAATGCAGTGTACAGAATCAAGATCCAGCTCCAACCCCCAACCCTCAGTGGGACTCAACCCCCGCACAGCCCACCCAGCCGGGCCTCAGGATCACCCAGGTGGACATGAGCAGGAGGGGGGCCCAGGGGCTCCTCAAGGGCCACGAAACTACTCCAAAACCTGGCTCGGTCTGACTGAACCTTCTAGAAGTCCTATGGAGTTCCTTCGACGAATGGTGGACTGAGGAGACTATGAAGTTCCTATATGGCCCAGACCActttaataaaacaacagtagaaacgaagaagaaaaaggaggaggaggaggaagaagaagaactgGATGAAGATAACCTGGAGGATGTTGTAGAAGGGGTTGGGGATGGAGGGGACGGCGGGTCCCCAGAGGGTCAGGGAGTTCTACAAAGGGGAGCCCACTGGGTGTCAGGGAAACGGGCCCTGAGACTCAGAGGTGAGTGGGGGATAAGTGTAGTGTAGTAACTGTCAGTGTCCAGATGGGGGCACTATGTATAAGCATTGGAGATGTTAagcgtgatgatgatgatggtcttGTTTTTGAGGTTGGCTTTTACCATGAAGATGGTTTTTTTTATGTCTCACCTCACTTCTTTCCCTcactctgtgtctcctctcctttcccatctatgctctctctccttctttcacgCTCTTTCTCCTGCTTTCACAATctttctctcatgctctctctccacccccccacccaggACCAGGGTGGTTGGTTGATTCCCATGCCTAGCACCTCATACAGAAACACATAACGGTTGAGAAGCTCactagagggtgtgtgtgtctgtatgaaaATGCTGCTACGGTTTTCAAAGTTCAAAAAACTGTTTTATGCAATGGAAATGTGGTCACTGATGTGCTGATAGTTGACAACCAGCAATATTACAGAAACATTGGTAAGTACTAGCTCGGTCTTGTTGAACTTCGCATCTCAGCAACTTAAGAAATGAAATCAAgttctgtgtatatgtgtgtgtatttatatgtcCGGTTTTCCTCATCTTGGGAAACGTCTCACCATGACTGACATCTCCAGTGACCACAACAGCCTGGTCAGGACCTTCAGGTCAGTGCCAATGTCAACTCAGAGTTAAAGGGccaatccttaattgaaacaataaaaaacgcctctgttttggtaaaaagctcaaggatgggcctggagaaatgtaactcttctcaaattcatagacagagctatggatgcaaggactgagcGTCCTAGATTAGAGTTTCAAGCATGTTTTGAGgcaatacagtgtttgtttatatttgaaatctaattgtattggtcgcatacacatatttagcagatgctactgaaggtgtagctaaatgcttgtttACTAACATTGGAgtgaaacaagcttatattttgggttctgatggggtatgacattTGAACTTAGCTAATAAAGCAATTTCTAAGTTATagtcttcaagaatcaatgggtatgtatcgttaatttataagtccaaaaattgaTGTATTACACTGCAGATTGCTGTTTTTACACACCATTTCCTACTACAGTGTCCAATACTGTCTGGGAGAGAAACTGGACATTTTACACTCTTATTTCAGTCAATATTTACCTGGTCCCGTAGTCATAAACCATCTTATCtgaagtgctgatctagaatcagtatTGGCTTTTTGATCATagtgaataagattacatggacgggAGACGAGGACACacatgatcctagatcagaactaCTACTCTGAGACACTATGAATACATGCTCTGGTATTTATGGAGAAGTTATGTGGCGACAAGGCTTTCACGAACTGAGTGAACTTTTCAGGGTAGCCCCAAACTGCCAGAGGTGAACTCTGTTCCTGTCATGGGCACTAACTGGGCTGTGATTGGCTGATTGAGGTGCAGTCAACAGGAAGTAGTGATTGGCAGAGTGCTATTGACTTCCTGTAGCTCTGATTTAATAGCGAGGCACTTGAGTCACACCTTCAGCAAGAGGCCTGTTTCCAGGAATTATCTGCTAGCTACTATAAGGCCTGCTGGAACAGCAGCCAGACATTACACTGCAAACTGTCAAATAAACACCTATAATTGTTCAATCTATATGATGAGGTGTCTCTGATATGGTTGGACATTAGGCTAATATGATTTAGAGATTTTCAGTGCCAAGTTGAAGCAAAGGACAGAGACTGTTGTGTTTTCTCTTTCATGGAAAATCAGCGATGTCAGGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCAGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTCATGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCGGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCCAGCCTGGTGACAGTGCGATGTCCAGCCTGGTGACAGTGCGATGTCCAGCCTGGTGGCAGTGCGATGTCAGACCTGTGCAATTTTTTTTACTATACAGTGTATTTTTTTCCATGGCAGGTTCACAAACACCAACATTATCCACGAAGGCCCAGAGGGGACCATGATCGTTATGGTGCTCCTCaatctgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatgtgctGTTGCAGGAACAGCTGGAGAGCCTGTGCCTCAGTAGGATCCGTCAGGGATCAGCAGAGGAAATCAGAGAACATTGTTTTACCTGGGGGAACACCCTCTCAACAAACTTAACCTAGTGATTTATCTCTACTTGTGTGTATCCAGGGtgcactgcagtgtgtgtgtgttcttttggaTGCTCTCTTTGGTACATTTTAAACATCACAAAAGGGAATGCCAACCTGTTAAAACTCATGATTTCATTAAGATATGCATAGAATTAGAATTTGTATATTCATTGTTATGAAAAACGCATATACATAACCACAGGCACAGCAATTCAAAGGTTTCCTTGTGTTTTATGTTGCCCTGTGAAATatacagtggtgtgtgtgtgtgtgtggcatctcCAATCTGCATTGTGTGCTTGCCCTTGCGTTGTTTGACCTGTGCCAGAtggcgtgtgtgtggtgtgtgtgtgcactactTCCCCAGGCAGGTCGGTGGCAGGGCGTGAGCCTAGCAGGCGCTGTGTGGGACAGTTCCGTGCTGCTCCCGTCTGTGTACACACAGACGCCTCTCGGGCCTTATCTCCTCCACCTGATTACCCCCCCCAAACCCAACCCTCTCTAGATCCGTGATGCAGCAGCCCGGGGCGACACACACACCCTGGGAAACATTCCATTTGGTCCCTAACTGATCCACTGTGTACACCACCCCAGAGAGGAAACCAGGGACATAACTTCAGCTCTGATTTATAGCTGTCTAAATAAATGGGAGATGACTCTTTCTTGAGCTGATATCACCTTATCTAGGCTACAGATGTTGTCTTCATCCAATCTGATAAGTAGATGGTAAAGAACATGCCTTATTGAGTGAGGTGCTCAACAAATAATTGAACGTTGTACCTGGCTGTTGGCTGCAGTATGGTTTCAACTAACTCAAAATGTCTCGTATTTAGTTCTGCTCATAATGATGTTTATTATAAGAAATTATAAAGTAGTCTTATGACAAGTCTTACATTGCATTATAAGCACATCATAAAGCATACATACTTATCCGAAGTgttatccatttttttttttgttacttacTAACAATATATCTGCAGGACCATAGAACAGTACCAAGCCATTAGCATTTGAGTCAACTATCCATCTCATGAATAATTTGGAGTTGAGGCCTACCTACTGCATGGCAGCTGTGTAATTAGTCAggcctctgttgttgttgttaggtgaatcATGTGAATAATGGATGGGCCTCATGCAACACTAGACCCAGGTAGCAGCATTGCTCCAGGAGACATACTCACTGTGCTCCTGTATTCCTAAAACATATTTACCAGCCCTCTGGTTAGCCTATTTCCGAGATACTCTTCCCATCACCAAAGGCAAATATATCATCTGGAATGCCTTACCCATCCCTACTGGCTATACAAAATAAAGTGTTCCCTTAAACACACAGCTTTGTAAACTTTACAAACATGTGCATTGTGCTGCTGAGGAGATTAGTCATATTGCCAGCCAGAAATCATATACATATTTACTATAGATGCCTGCGGAGATCTGCATGTCACGTCGGGGGCGATGAAACAACAGAAGCAcgtttattttcaatgacagaagCGAAGTGGGCGGTACCGTTGGGCAATAAGAACGTGGGCTAGGGACTTGAAAAGGGCGGGACCAAAGTTGGGGATTGTGGAACTTTATGCAAATACTCAGCGACATCTCGTTACTGTTGGCCAATCGAAGCTCATTAGTTTCCAGCCCCTTCTGGATTGTCTGTTGATACCTAGTCTGCTTGCGACCGCCAAAGGTAATTTACTATTGAGCCGACAGATGTATCATTTATGGAATGCGGTCTCAGCAaacgtgggaacattgcctttaatgtttttattatttaacctttgtttaactaggcaagtcaattaagaacaaattattatttacaatgacggcctaacccggacgaggctgggccaattgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433296 lncRNA downstream 1402 31342233 ~ 31342593 (-) True LOC118944817
TU2433297 lncRNA downstream 1878 31341989 ~ 31342117 (-) False LOC118944817
TU2433267 lncRNA downstream 57907 31246275 ~ 31286088 (-) True LOC110508945
TU2433265 lncRNA downstream 60140 31245122 ~ 31283855 (-) True G2128200
TU2433338 lncRNA upstream 20318 31371589 ~ 31371788 (-) True G2128266
TU2433342 lncRNA upstream 30486 31381757 ~ 31381985 (-) False LOC110508218
TU2433364 lncRNA upstream 33934 31385205 ~ 31385435 (-) True G2128288
TU2433345 lncRNA upstream 34754 31386025 ~ 31386241 (-) True LOC110508218
TU2433368 lncRNA upstream 43583 31394854 ~ 31395201 (-) True G2128292
XR_005040197.1 mRNA downstream 2 31341802 ~ 31343993 (-) False LOC118944817
LOC110508948 mRNA downstream 20708 31319275 ~ 31323287 (-) True LOC110508948
XR_005040311.1 mRNA downstream 23365 31320507 ~ 31320630 (-) True LOC118944907
XM_021589868.2 mRNA downstream 38785 31285147 ~ 31305210 (-) False LOC110508945
XM_036966029.1 mRNA upstream 10440 31361711 ~ 31368531 (-) False cdc7
XM_021589879.2 mRNA upstream 10440 31361711 ~ 31368537 (-) False cdc7
XM_036966027.1 mRNA upstream 10440 31361711 ~ 31369514 (-) False cdc7
XM_021589878.2 mRNA upstream 10440 31361711 ~ 31369517 (-) False cdc7
XM_021589880.2 mRNA upstream 10440 31361711 ~ 31369517 (-) True cdc7
TU2433312 other downstream 20631 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 20631 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 23372 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 99303 31244091 ~ 31244692 (-) True G2128216
TU2432521 other downstream 637450 30705085 ~ 30706545 (-) True LOC110508928
TU2433533 other upstream 360337 31711608 ~ 31737492 (-) True LOC110508968
TU2433711 other upstream 531444 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 671787 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 671787 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 710778 32062049 ~ 32165022 (-) False asip2b

Expression Profile