RNA id: XM_036966643.1


Basic Information

Item Value
RNA id XM_036966643.1
length 7347
RNA type mRNA
GC content 0.52
exon number 48
gene id LOC110508970
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31822142 ~ 31859100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctttgccccagtgatgtactgggccgttcacactaccctctgtagcgccttactaTTACTGTAGTAAGATGGCGTCGGTGGCTCCATGAACAGGGCGACCTTGTCTACCGCcgccataacatctgctaaatatgtgtatgcaaccaataaaatgttatttgattttgtATCAATACAGAAACCAGACCAGTGTCTGCTGCCATTAACACAGGTCCAAAGAGCACTGCTATAGTTTCATAAGAGCTCCCAGCTCATAAACTCTTTCTAACATGTTCTGTGATTCAATTTGTAGATTTTGATATGGATTATTTAGGTTACAGGTTAACGTCTGGAAGCAGGCCCAGAATTGAAGGGCGAATTGGTCCAAACGCACTAGGAGAGTGAGTGGGTAGGAGCCGACTTTGCTCCTGTCTTCTTGAGCAGTGAGTCTGCAACATGACAGATCAAAGTCAAAGTGCCATAAAGGAGATGTGTCAGGGCCAGGAGTTTCAGTCGTTTCCTCGTTCTTTGTGCTATCCTGGTAGGGTTGTGTTAACGTCATCTAACAAACATATGAGCCCACATCTACTGTACAGGACTAACTGAAGAACTGGGATTTCAATGAGGACCGTCACCTGAGTTGCTACGAGAAATAGGAGGGTTCTATCATGGTGATGTTGAGAAAGGGTGAGTGGGTGTGGGTGGACTCTGGTACCGGGGTGCCCATCGGAGCCCGGGTCAAAGTGACCGACACTGGACACCAGCTCCTGGTTGACGATGAAGGAAAGGAACACAAGCTCTCCCAGAAGGAGGACTCCATAAGGGTGATGCACCCCACCTCGGTGGAGGGGGTGGACGACATGATCCGCCTGGGGGACCTCAACGAGGCCGGGCTCCTCAGGAACCTGCTGGTCCGACACAGACAAGGCATTATCTATACCTACACAGGCTCTGTGCTGGTGGCAGTCAACCCTTACCAGGAGCTTCCTCTCTACACCGCCGACCAGGTGAGGCGGTACCACGGGCGTAGGCTGGGAGAACTACCCCCACACGTCTTTGCCATCGCAGATACCTGCTACTTCAACATGAGCCGCCACAACCGAGACCAGTGCTGTATCATCAGTGGGGAGTCGGGTGCAGGGAAGACTGAGAGTACCAAGCTGGTACTTCAGTTCCTGGCTGCAGTAAGTGGACAGCACTCCTGGATAGAGCAGCAGATACTGGAGGCTAACCCTATACTAGAAGCATTTGGGAATGCCAAAACAATTCGCAATGACAACTCCAGTCGCTTTGGGAAATACGTGGAAATCTTCTTCAACAAAGATGGCGTCATCGAAGGTGCTCGACTGGAACAGTACTTACTGGAGAAGTCTCGTGTCTGCCATCAGGCCATGGAGGAGCGGAACTACCACATATTCTACTGCATGTTAACGGGGATGACAACAGAAcagaaaaaaaatctgtgtttggGAGATGCCTCTGAATTCAACTACCTCAAGAGGGGGGACTGTATTGTCTGCGATGGACGTGACGATGCTAAGGACTACACCCGTATCCGCACGGCTCTGAAGATCCTCACCTTTACCGAGACCCACTGCTGGGAGATCCTCAAGCTGCTTGCTGCACTACTCCACCTGGGCAATGTCAGCTTCGAAGCCTCCATCTTGGATAACATGGAGAGCTCTGATGTCAGTTCATCGGATCACTTTACAATTGCAGCCAAATTGCTGGAGGTGCAGCCTGCGTCTCTGGGTGTGAGCTTGACTTACCGCTCCTTCATGACCAACAGAGAGCGAGTATCCAAACCCCTCAGCTCTGAACAGGCAGCCGACTGCAGGGACGCCTTCGTTAAGGCAATATATGGTAAACTATTTATCTGGATTGTTGGAAGAATCAACAGTGTCATCCATAAGACTCCCACCAACGGTCCCAAATACGTCCGTAACTCCATTGGCTTGCTGGACATCTTTGGGTTTGAGAACTTTGCCTCAAACAGCTTTGAACAGCTGTGCATCAACTTTGCCAATGAGCAGCTGCAGCAGTTCTTTGTGCGTCATGTGTTCAAGCTGGAGCAGGAGGAGTACACTAAGGAGGACATCGTCTGGAAAAACATCACCTTCAATGACAACACGCAAACCCTTGATCTCCTGGTTGGGAAGCCCCTCAATGTGTTGGCTCTGATCGATGAGGAGAGCCACTTTCCCAAGGGCACAGATGTCACCATGTTGAACAAGATGAACCAGGTTCATGCCAAGTGCAACATCTACATTCCGTCTAAGAACACCCACGACATGGAGTTTGGGATCCGCCATTTTGCTGGGGTTGTGTACTACGACTCAAGAGGATTCCTGGAGAAAAACAGAGATACTCTCAGCTCTGACATTATCAAGTTGATTGACACGACAACCAACAAGCTGCTGAGGCAGATCTTTGAGACGCAGCTCAGTGCTAATGTCGTGAAGAACcctgccagcaacaacagggtcgTTATGACACCCAAGAGCTCTCTACGGGGGGCCCAGACGGACGGCAGGAAACAGGTGTCCACGCTGAGCGGTCAGTTCCGCCAGTCCCTCGACTCCCTCATGAAGGCCTTGTCCATCTGCCAGCCACACTTTATCCGCTGCTTCAAGCCCAATGACAACAAGAAATCCATGTGTTTTGACAGAGACCTGTGCATACGTCAGCTGCGGTATTCTGGAATGATTGATACCATCAGAATCCGGAAACTGGGATATCCAATCCGTCACACGTTCAAGCAATTTCTGCAGCGGTACAGAGTACTCCTAAAGACAACCGTCTGTGACCCCAAAACTGAGTCAGCATCAGCCTGCTGTATTGCCATTTGCAAGGCCGTGATCACAGGACATAACGACTGGAAGATCGGCACGACTAAGATCTTCCTAAAGGATGCCCATGACTCCCTACtggagtgggaaagagagcgagagctcAACAGGAAAGCCCTCATCATCCAGAGGGTCATTCTTGGCCACAGAGACAGGAAGAGCTTTGTAAAGAAAAGGAGAGCCGCTGTGGTGGTACAGAAGCATTGGAGAGGTTACAAAGACAAGAATCAATATAGAAAGCTCCAGCGCGGCTTTCAGCGTCTGCAGTCTACGATCCGTGGTCGTCTATCCCGGCTGCattacctgaaggagctggcggCAGCCGTCACTCTGCAGTCCCAGGTGCGCGGGTACCTGGCCAGGAAGAGTTATAAGAGCAAGAGAGAAGCTGTGACTGTCCTCCAGGCACACACCAGAGGCATGCTGGCTAGGAAGACCACCAACAAGATGAGGACAGATgcATTCCTATCAGCCCGGGAGCGGGAGGCGAGAGAGCAGACAGCCGCAGAGCTCCAGCGGAGGCTAGAGGAGGTCCTCAGCCAATCACAACAGGCTGCTGCCGAGCCAGAGCCAGTCAGTGAGCAGGAAATGGTGGAAACAATGTTTGAATTCCTGCCCCACAAAGTGTCCGTAGGAGGGCGGGAGGGCCCGGCTCCAGAGGGCTTTGAGGACTTGGAGAGAACGCGAACAATCCCAGAGGTGACTGAGGAGAGCCGAGAGGAGAGTCGAGAGGAGAGCCCAGTAGAAACCCCAGCTCCGGTAGTAGTacaagtaccagtaccagtactaGCTCGGACTGAACCAAGTCCTGCACCAGCACCAGTACCAGTGGAACTACCAGTGGTGGAGTAcgatgatgaggatgaggagtTCTCCTTCATCAAGTTCAGTGCTTTGCACTTCCAGGGCTCTGCTACCCACAGTCACATCACCCAAAGGCTGCGACAGCCCCTGCTCCACCACGAGGACGAGGGGGACACACTGgCCTGTCTGACAGTGTGGTGGATCATCTTGAGGTTCATGGGGGACATCGCTGAGCCTAAACAGATCAACCAGGAGCCCTCCACCACCATCCAGAAGAACCTTGGCCAGAGGCAGAACAGGAGGCTCAGCAATCTAGTGGGCCTGGATCAGAAAATACTAAGGAAAaatagaaagaaagaaggaaTGGGGAACAGAAAAGCTTCGACCATTGTAGATGAGCCGGAGACTATGACGGAGGAGGAGAAAGACATTCTAATTGGAGAGGGGCGTACTTTGGATCGGCCAATATCCGACCTGGAAAAGCTGCACATTATTGTTGGATACGCCCTATCCAGACGAGATATAAGGGATGAGATCTATTGTCAGATCATTAAACAGCTGGTGAACAATAAGAACCAGAAGAGTTCCCTCAGAGGCTGGGTCCTCCTGTCCATCTGTCTTGGTATCTTCCCCCCAACAGAACTCCTTATACAGTATCTTGAGAGCTTCCTGCGCAGAGGGCCAAGTAGCTATTGTCCGTACTGTGCTGAGCGCCTGCGTCGCATCGTGGCCAATGGGGAGCGAGGCGAACTGCCTTGTTGGATAGAGCTCCAGGCCGTCAAGACCAAGAAGCCCACACAAGTATCTGTGGCCCTGATGGACGGCCTTAGTGTCAGCCTGCCTGTTGACTCAGCCTGTACCTCTGCTGAGGTGTGCCAGGCTCTGGCCAAGAAAGTCAACATCAAGGATACCTACGGATTCTCTCTTTACATCGGCTTCTATGAGAAGGTGTGGTCCCTAGGCAGTGGCGGGAAGCACGTGATGGACGCTATCTCGCAGTGCGAGCAGGAAGTGAGGCGGAAGGGCGAGGAGGAGCAGCACGCCTCCTGGAGACTCTACTTCCGCAAGGAGTTGTTTACACCCTGGCACGATTCCTCAATAGATGCCGTCAGCACAGATCTCATCTACAGACAGGTCATCAGAGGCCTCAAGTCTGGGGAGTACCATTCTGAGAAGGAGGATGACTTTGTCCAGCTGGCAGCGATGTACTACTATGTGACGTTTGGGTCTACCAACAGTGTAGAAAGTGCCAAGAAGGTGGTGGGGGAATGCATCACTACTGAACTTATTGAGACCAAGTCACAAGGAAAATGGATTCAGCTGGTCACCGCAGCACATACACAGGGTCCTTACATAAACAGCAGAAGGAGCACAGACAGCGTGAAGGGGGACGTGGTTGACTACGCTCGTCAGAAATGGCCCATCTTCTTCTCCAAGTTCTACGAGGTTACGCAAATGTCAGGACCTCCTCTATCCAAAAGCAATTTTATTGTGGCCATCAACTGGAATGGGATCTCCTTTCAGGACGAGAAGGAGAAGAAGCTCCTCGAGCTGCCCTACCCAGAGGTGACTGGGGTGAACAAGTCCAGTGATGATGGCAGGATCGACAACAGTCAGTCTGTGAGCCTGGCCACACTGAGAGGGCAGTTCATACTGCAGTCTGTGGAGGCAGGGGAGATGGCTGACCTGATCCAGTGGTACCTGGAGGGCCTGAGGGAGCGCTCCGTCTATGCAGTGGCCCTGCAGGACATCAACAGACAGGACGACCCCACGTTCCTGAGCTACAAGCGAGGGGACATGCTGGTCATCTTGAAGGACGGAGAGTACTCCCCTGACCGGGGCTGGATCAAAGGCACTAACGAGCGCACCGGGAACACCGGCGCCGTCTCCACGGATACCGTCCTGGTTCTGCCAACCCTTGACAAGCCCAGCGATACCACACTGAGTCTGCTGAATCTGAGCCCAGATCAGAGGACAGTGGCTCAGAACGCACCCGCTAGGGAAGAGGCAGTGTCCCCCGTCTCACTGAAAGAGTTTGCCTATGACTACTTCAGGCAGCCTGGTAAAGAAGGGGGCCGCGGGGCGCAGGCCAGAGGCAGGGAGAAACTTTGGGCTGCCTCCAAAGAACCCATTAAACAGCCCCTACTGAAGAGTCTGGTGGGCAACACCGACCTCAGCCATCTGGCCTGCATCTCCTTCACTGCTATCCTAAAGTACATGGGAGATTACCCCATCAAACAGGTGCGCCAGCCCATAGAGCTCACTGACCAGATCTTTGGCGCGGCCACTCAGCATGTACCTTTACAGGACGAAGTCTACTGCCAGATCATGAGGCAGATGACCAGTAACAACAGCAGaATGAGTGTAGACTATGGTTGGCAGCTCCTTTGGCTGTGTACCGGCCTTTTCCCCCCCAGTCAGATCTTGCTGAAGTACACCCAGCGCTTCCTAGAGTCACGGCCCAGAGAGCCCCTGGCTGCAGACTGCCTGCAACGGCTACAAATGCTAGTCAGTATGGAGCCCAGGAAGCTGCCTCCCCATCAGGTGGAGGTGGACGCCATTCAACAGGACAGCAACCAGATCTTCCATAAAGTCCACTTCCCTAACGACAGAGCTGAGCTCTTCGAGGTGACATCAACGTCTAGGATTCGTGACCTTGTTCGTAACATTGCCTACAAGCTCATTCTGGCCTCAGCTGACGGTTACAGTCTCTTCATGAAAACGCCAAACAAGGTGGTGAGCTTACACGACCAAAACTACTTCTTTGACAGTTTGAGGGAGACGACAGACCAACCTAAGAAAACGAAGAGAGCCAGAGAGGCAAAGAAAGGAGGTAAAACAGAGGGAGGTCCAGCCACCATGCCCTACCTGGTTATATTCATGAGGAAGCTGTGGTTCAATGTGACCCCAGGAAGAGACCTGACCGCTGACCTCACTTTCCATTTCCCACAGGAGTTGCCCAAGTACCTGCGTGGCTACCACAAGTGTACCAAGGAGGAAATGACCAGCCTGGCTGGCCTGCTGTTCCGGGTCAAGGTGGACACGGACAGGTCCCAGTTTGTCATGATTCCCAGGATGCTGAAGGAGCTGGTGCCAGCTGACGAGATGAAAACCATGTCCCCAGAGGACTGGAAGAagCACATCATCGCCTCCTACAACAAGCAGGCCGGGATCACCTTGGACGAGGCTAAAGTGGCCTTTCTAAAAGGCATCTGCCACTGGCCAACGTTCGGCTGTGCTTTCTTCGAAGTTAAGCAAACCTCTGAGCCGAGTTACCCAAGTATCATCCAGATTGCAATCAGCAAGCAAGGAGTCAACTTCATCAACCCCAAAACAAAGGAGTTTCTGGTCATGCACCCGTTCAACCGCATCACCAACTGGTCCAGCGGGAGCACTTACTTCCACATCACCATTGGCAACCTGGTCAAAGGGAACACTTTACTTTGTGAGACCTCATTGGGTTACAAAATGGATGACCTCTTATCATCTTATGTGAACATGTACGAGATGCAGAGGCAGGCTGTGCGACCCAGAAATAACTCCATGTTCCCTACCTAATGCCTGCTGGGAAATACGGAAATATGGAGGACAAGGAAGATACATTTAATTGATAGAACTAGTAATTTGATGGAGGAATTTAATTATTATATTGCTTTTCAGTTGGTCTAAATCCTTTTGCCTAGCTTTGTAATTAAAATGCTGTATTGAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433673 lncRNA downstream 20827 31795433 ~ 31801315 (-) True G2128536
TU2433658 lncRNA downstream 48483 31773421 ~ 31773659 (-) True G2128524
TU2433656 lncRNA downstream 49349 31771823 ~ 31772793 (-) True G2128522
TU2433552 lncRNA downstream 60477 31710290 ~ 31761665 (-) False LOC110508968
TU2433559 lncRNA downstream 72389 31742995 ~ 31749753 (-) True G2128440
TU2433699 lncRNA upstream 18292 31877392 ~ 31879509 (-) True G2128556
TU2433712 lncRNA upstream 24479 31883579 ~ 31884197 (-) True G2128569
TU2433717 lncRNA upstream 29949 31889049 ~ 31889264 (-) True G2128574
TU2433720 lncRNA upstream 34443 31893543 ~ 31894583 (-) True G2128577
TU2433725 lncRNA upstream 36596 31895696 ~ 31898461 (-) True G2128582
XM_021588580.2 mRNA downstream 59054 31751423 ~ 31763088 (-) True nilt3
NM_001160493.1 mRNA downstream 59094 31718689 ~ 31763048 (-) False nilt3
XM_036966696.1 mRNA downstream 106328 31708667 ~ 31715814 (-) False LOC110508968
NM_001160492.1 mRNA downstream 127989 31679423 ~ 31694153 (-) True nilt2
XM_021589895.2 mRNA downstream 237946 31576878 ~ 31584196 (-) True thap4
XM_021589911.2 mRNA upstream 93099 31952199 ~ 31954935 (-) True LOC110508975
XR_002471379.2 mRNA upstream 101401 31960501 ~ 31967067 (-) False LOC110508977
XR_002471380.2 mRNA upstream 142155 32001255 ~ 32006090 (-) False LOC110508978
LOC110508982 mRNA upstream 163957 32023057 ~ 32028435 (-) False LOC110508982
XM_036966563.1 mRNA upstream 175723 32034823 ~ 32051914 (-) False LOC110508983
TU2433533 other downstream 84650 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 498778 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 498778 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 501519 31319283 ~ 31320623 (-) False G2128242
TU2433286 other downstream 577450 31244091 ~ 31244692 (-) True G2128216
TU2433711 other upstream 23615 31882715 ~ 31883140 (-) True G2128568
TU2434105 other upstream 163958 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 163958 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 202949 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 297932 32157032 ~ 32165022 (-) False asip2b

Expression Profile