RNA id: TU2434071


Basic Information

Item Value
RNA id TU2434071
length 4294
lncRNA type read_through
GC content 0.40
exon number 3
gene id LOC110508977
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31958284 ~ 31967067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAATACAATGTAAACAAAACTATTTAGGTAAACTCTTACATTAAAAAAATTGCATAAGGGTATAGTAACCACCCAATCCTATTTATTTGTTTGTAATATTCTAACCCACAAATGCACAGTAAAATAAATCACATTTATATTTCagcagtggtagaaaaagtatccatttgtcatacttgagtgaatgtaaagataccttaatagaaaatgactgaagtaagccacccagtaaaatactagttgagtaaaagtctaaaagtatttggaatTAAACCTTATTAAGTATcagaagtaaaagtataaatcatttcaaattgattatattaagcaaactaaATGGCtaaactttatttatttttgatttgtttggaTAGCTAGaggcacaccccaacactcagaagcatttgtgtttagtgagtccgcctgAGCAGAGGCagtaggatgaccagggattttctcttgataagtgtgtgaattggaccattttcctgtcacgCCAAGCAtaaaaaatgtaacgagtacttttgggtgtctaTATGGAGtacaaagtacattattttctttaggaatgtagtgaagtaaaagttgtcaaaaatataaatagtaaagtacagataccccaaaaaacgacttaagtagtacttcaaagtattttttacttaagtactttacaccactgtatttCAGTGCATTTTTGAGAAGATACTGCTCACAGCATTAGCAAGCtacagtgaattcggaaagtattcagaccccttttccacattttgttacattaccgcTTTTTATGGATTAAAATCCCCccaaaatcctcagcaatctacacacaataccccataatggcaaagcggaaacaggtttttagaaatgtttgcaaatgtaacaaaagtaaaaacagaaatatcttatttacataagtaatcagaccctttgctatgagaaattgagctcaggtgcatcctgtttccattgatcatccttgagagttttctacaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggctcctgtctatagaaggtcccacaATTGGCAGCGCATGTCCGAgcaaaaaaaccaagccatgaggtcaaaagaaTTGTCTGTAGAACTGCGAgagaggattgtgttgaggcacagttctggtgaagggtacccaaaataattctgcagcattgaaggtccccaagaacacagtagcctccgttattcttaaatggaagaagtttggaaccaccaagactcttcctagagctggctgccaggccaaactgagcaatcgggggagaagggctcagaccatgagaaacaagatgctctggtctgatgaaagcacgatttaactctttggcctgaatgccaagcgtcacgtctggagttaacctgtcaccatccctacggtgaagcatggtggtggcagcatcatactgtggggacgtttgtcagcagcagggactaggagactagtcaggatttagggaaagatgaatggagcaaagtacagagagatccttgatgaaaacctgctccagagcggtcagcacctcagactggggcgaaggtttaccttccaatgaatgtccttgagtggcccagccagagcctggacatgaacttgattgaacatctctggagagacctgacagtagctgtgcagcaacactccccatccaacctgacagaactttttatttaacctttatttaactaggcaagtccgttaagaacatattcttatttacaatgacggccttacGGAAGGCAAAAGGCAACCAGCgtggacgggggctgggatttaatTATacttttaaatttatttttaatataggtcaaaacacacatcacgacaggagagacaccacaacactacataaagcgaGACCTacgacaacaacatagcatggcagcaacacatgaaaacacagcatgatagcaacacaacatgtcaacaacatggtagcaacacaacatggcagcagcacaacatggtacgaacattattgggcacagacaacagcacaaagggcaggaaggtgagacaacaatacatcacatgaagcagccacaactgtcagtaagagtgtccatgattgagtctttgaatgaagagatggaaataaaactgtccagtttgagtgtttgttgtagctcgttccagtcactagctgaagcaaactgaaaagacgagcaacccagggatgtgtgtgcttcggggacctttaacagaatgtgactatCAGAATGGGTGTTGAATGTGgaagatgagggctgcagtagatatctcagacaggggggggggggggggggggggcaatttaataaattttagaataaggctgtaatgtcacaaaacgtggaaaaagtcaaggggtctaaatactttccgaatgcactgtacatctcaaactacacacaaatactattttcacactactgagccgaaCTAAGTGGGGCCGAGCTGAACAGTGCTGTCCTCGTTACgcatccaccatagttgctggaatCATGAACGGTGTGGAAAGAAAACATCAGAGCCAGCACAGTGCAGTTTGGGTTGAATCGATAGTGTGAAAATAGTAATAGAGTACTGTATGTATGCATCATGGATATATTGCTTGCTAGTGGAGTGTCTCACAGTAAAACAACCAGAAATGAAAATAACAGAAATCATGAATCAAACCAAACCAACCATCAAATCAACAAAAATAACCCCAGCTTTGACCCTAGGCAGTGCTGTACCCAGAATAGAGAGTGGCTGGATGGAGGTGGGTCATGTTCAGCACAAAACAGAGGAAAACGGACTTAAATGGAGTGAAACGGGAAGGCACTACCTGACCAGCTCTAGACGTAGTCTCTGCCTGGTGGGGCAGCGGAGCGGTTCGGGGGGTAGCGGGAGGACTTTCCTGAGCCTTCACTGGAGCAGTTGCAACAGAGGAAGGCTCCACCTATGATGGTGAAGCAAGCAGAGCCCCAACCTACGAACAGGGCCTTGCCAAACTCATACCTGCAAATAGACATTTCAATAACAATATCAATCAAGAACTAAACATTGATTATGCCAGACAGGTGGTACACTTCATGCCCACCATGGCCACCAGGATCGCAATGCCAGCCAACAGGATGGCACCCACCATGAGACCTCGTGTGCCCTGCACCATCCCTGGGAGCAAGAGAAAGGCCAGAAgacacaatcaatcaatcatagaATTTCATATTTGAGCTTTAATGATTATGTCATTACTATGCCATTACATGTTATTACATACGTCATAGGGCCTACATATAGCCTAGCTCCTGAATAACGTCAGATTGCCTAGAGAATATTATATTATCAATGTATTCAGAGTTAATACAATTATAATAGAAAAGGGATAATTGGGCAGGAATGCAAATGTATTATAGCTTTCATCAccttgaatgtaaaaaaaaatgcaggTTCAATTGACGAGGAAAATGCTGAatgtatattataaactgggtggttccagccGTGAATGCTGAtaggctgaaagccatggtatatcagactgtaaaccacggatatgacaaaacatgtatttttactgctttaattacgttggtaaccagtttataatagcaataaggcacctctggtgtttgtggtatattgccaatataccacggctaaggaatGTATCCAGGCGTTCCGTGTTGTGTTGTGCAtaaaaacagcccttagccgtggtatattggcaatatactaTACTGCATTTTTGCTTTATTAAAACATTCTTCAAACATTTGTTAAGACATTGGATTTTGAATTAATATGGACTTCAGATTTCAATTGTATCAGACAATGGTGCACAATGGGGTTGGGTTTTAAACCTAGTGTAGATGGAGTTCAGGTGTTTTCATCTGTTACCACGGGGAGCAGGCATGATGGTTATCCTTGGCATTCTCAAGGCTTGTCTGTACATGCATGAGATCTTCTGTAGCATTGGGGGATAGGTTTTTAAACCTCACTTAATCTATTGTAGGttaatgtatttttttcaaaGGTAAATGGATCAGATTAATTTAtttcaaatcacatttttttggtcacatacacatatttagcagatgttattgcgggtgtagtgaaatgcttgtgttcctagctccaacagtggagtAGTATCAAGTATTTTATGAACACTTTACAGATGTGGATTAATTTATAGGCCTTCTGGTACTACGTTTTGAACCATGAAAAAAGTATTGATAGGTCGTTTATAATTGTTTTTATAGTACTGTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433752 lncRNA downstream 22640 31935028 ~ 31935644 (-) True G2128608
TU2433723 lncRNA downstream 35592 31922092 ~ 31922692 (-) True G2128580
TU2433724 lncRNA downstream 36548 31921258 ~ 31921736 (-) True G2128581
TU2433722 lncRNA downstream 37159 31918016 ~ 31921125 (-) True G2128579
TU2433736 lncRNA downstream 47726 31909472 ~ 31910558 (-) True G2128593
TU2434092 lncRNA upstream 38424 32001774 ~ 32014890 (-) True LOC110508978
TU2434108 lncRNA upstream 59708 32023058 ~ 32028558 (-) False LOC110508982
TU2434109 lncRNA upstream 59708 32023058 ~ 32028558 (-) False LOC110508982
TU2434115 lncRNA upstream 59708 32023058 ~ 32028558 (-) False LOC110508982
TU2434118 lncRNA upstream 59708 32023058 ~ 32028638 (-) False LOC110508982
XM_021589911.2 mRNA downstream 3349 31952199 ~ 31954935 (-) True LOC110508975
XM_036966643.1 mRNA downstream 99184 31822142 ~ 31859100 (-) False LOC110508970
XM_036966644.1 mRNA downstream 99184 31822142 ~ 31859100 (-) False LOC110508970
XM_036966646.1 mRNA downstream 99184 31822142 ~ 31859100 (-) False LOC110508970
XM_036966647.1 mRNA downstream 99184 31822142 ~ 31859100 (-) True LOC110508970
XR_002471380.2 mRNA upstream 37905 32001255 ~ 32006090 (-) False LOC110508978
LOC110508982 mRNA upstream 59707 32023057 ~ 32028435 (-) False LOC110508982
XM_036966563.1 mRNA upstream 71473 32034823 ~ 32051914 (-) False LOC110508983
XM_036966567.1 mRNA upstream 71473 32034823 ~ 32051921 (-) False LOC110508983
XM_036966566.1 mRNA upstream 71473 32034823 ~ 32053854 (-) False LOC110508983
TU2433711 other downstream 75144 31882715 ~ 31883140 (-) True G2128568
TU2433533 other downstream 220792 31711608 ~ 31737492 (-) True LOC110508968
TU2433312 other downstream 634920 31319341 ~ 31323364 (-) False G2128242
TU2433313 other downstream 634920 31319341 ~ 31323364 (-) True G2128242
TU2433314 other downstream 637661 31319283 ~ 31320623 (-) False G2128242
TU2434105 other upstream 59708 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other upstream 59708 32023058 ~ 32028558 (-) False LOC110508982
TU2434163 other upstream 98699 32062049 ~ 32165022 (-) False asip2b
TU2434159 other upstream 193682 32157032 ~ 32165022 (-) False asip2b
TU2434160 other upstream 193682 32157032 ~ 32165022 (-) False asip2b

Expression Profile