RNA id: XM_021589989.2


Basic Information

Item Value
RNA id XM_021589989.2
length 5190
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110509043
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33953697 ~ 33972737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTGCAGGAACCTGTTTGGAAcgtacatttttttgggggggcattTTGCTCTCGCGATATTCCCCGTACGTACTACGTGATTACACGTCAAAGGAGCTGTGTTGGAGAATCATGGCGGAGCGCAGGAGGCATAAGAAACGGATCCAGGAGGTGAGTGAGCCCACCAAGGAGGAGAAGGCGGTGGCCAAGTACCTCCGCTTCAACTGCCCCACCAAGTCCACCAACATGATGGGCCACCGGGTGGACTACTTCATCGCCTCCAAGGCGGTGGACTGTCTGCTGGACTCCAAGTGGGCCAAAGCCAAGAAGGGAGAGGAGGCCGTGTTCACCACCAGAGACTCTGTGGTGGACTACTGCAACAAgctgctgaAGAAGCAATTCTTCCACCGTGCTCTGAAAGTCATGAAGAAGAAGCCAGAGAAGGACATCAAGAAAGAcaaggagaaagaaaaagagaagaagaaggattCCAAGGATGTAGAGGCTTCAGATgtaaagaaggagaaagagaagaagaaggatgCAGAGGCTTCAGATGTAAAGAAGGAGAAGAGTGACGATAGCCCCGGAACGCCAAAGAAGAAAAAAGACGTGAAGAAGAAATTCAAACTGGAGCCTCATGAGGATCAGCTCTTCTTGGATGGCAATGAGGTATTTGTTTGGATCTACGACCCAGTCCATTTTAAAACCTTTGCCATGGGACTGATTCTGGTAATTGCAGTGATCGCGGCCACTCTCTTCCCGCTGTGGCCGGCTGAGATGCGTGTGGGTGTGTACTACCTGAGCGTGGCAGCAGGCTGTTTCGTGGCCAGTATACTGCTGTTGGCTGTTGCTCGCTGCATCCTGTTCGTGATCATCTGGCTGGTGACGGGCGGACGCCACCACTTCTGGTTCCTGCCCAACCTCACGGCTGATGTGGGCTTCATCGACTCTTTCCGCCCGCTCTACACGCACGAGTACAAGGGCCCGCGGGACGCCAGCAAGAAGAGCCAGGACAAGACTGAGGGCAAGACCAGCGATGAGAAGGAGGGTGAcggtgaggaggaagaggaggaaggagacgaGGGCACAGTGCCACAGGGGATGGAAGAAGGCGAGGTGGTGAAGGGGAAGTCAGCGAGTACCGCTGAGCGCTCTGACACAGACAGCGACCGGCGTGAGGACGAGGGCTCGCAGCACAGCAATGGAAATGACTTTGAGATGATCACCCGCGAGGAGCTGGAGCagcacacagaggaggaggaggaggaggaggaagaagagggggatgaaggaGAGCAGGAAGGAGACGGTGAGAGAAAGCCTGTACCTGTTCAAACATAAACATTCTATCACTgccacctccttctcctccaccctcGTGCTCCTCCAAGGACAACCTCCCACCTCCTCCAGGTCTTGTCAACCTCGCCGAGGAGACGAATCCATCTTGCCTGCTCCGATCTTCCACCAACTATACAGATGCCACGCCTGAGTATCGACACTGGTGTCAAATGGCTATAACATTGGAAAAGAGAAGCCTTATTGTGGTTCTAAAATCCCCAGCTTATTTAAACTGAGAAATGCAAACTAACTTAACAGATGTTTGTCTGAGGAAGTTGTCACGTTAGTACTCCCGACTTTCCCCCTATTTTTCGGTACTTACGTTATGACTGTTATCCCATATCATTCTAGTTAACTCATCCACTCTGTGTTATTTACCATTGCTACAATGCTCCCCTTGTATGTCTCTTGTCAATTTCCACGGGCGAGGGAGTTGGAGCTATGGAATCGTTTTTACTTGGGGAAGTACTGCCATCTTGTCTACCTACCCCTCAAATCCAGACTGTTGTCTTATGAACAACGTGCGATTTGTACAATCATGGTTAGGCTAAGCCCAGTGTTGTGTCCAGTAGCTGCAAAACACGGTAACTAAATTGAAATGGGAACCAAAATATACACATTTTCATCATTTCCCTTTGGTCTATTGTCACCCAACTGGGCCAAGGTCCTGTACTAGCAGTGGCATCTGGCCCTCTGTACACAGTTCAACTCTTGTTTTTTTACGAGTCTGATCTCTCCTCGGCAGCCATCGGACGTTACGATTGACCAACCGTTGGCTACGCCACTATAACTAATGCGGATGGACCAAAATCCATAGTTTACCCCACCACAAGAAAATACCTCACTTATTGGGGGGTTTTTCCCAAAATATGTCTGACGAGAGAACAAAAGAATGAAGAAAAAAATGGCGGCGGCAGATGAACGTCATTAACAATAAACAGCCTTGTGGTTCTTTTTGCGGtacttattttcaatgagaaATGTTTGGTTGATAATGATCggttctgttcacaaacacacacacacacacacacacacacgtaaaacCAGAGCTCATAAGAGTCATGTCCATTACAAGCAGTGGGACAACAAAAATAAAACGGGTTGTTTGAGATGCCACTTTCTAGAAGAAATGTGATCTGAGGCCACGCCCATGCAGACAGCAAAGATGGAATGGGAAACCTGTTCGTAAAGTTTTGTATTCGCCATTTAGAATCGGACATCAAGATGAAAGTGCCAAACTCGTTAATTGTTGTTACAATGCATGCTGTTTTCATACGGGAAGACATGGCAAAAGTGTCAGCAAGGCATTTTGGTACATTTTATTCATTTTTGTAACGATTGTGTCAAATTCCAAACCTTTTACACCTTAGAAACGCAGCGCCGTATAGGAGCCAAGGCATTAGTGTGTAGACCTTCTCCCTTCAGTTCTATCTAAGCCATGCAAAGCAGGCAATATGTCCTGAAGCTTACTATACTCATTCTACGATCGCTTGTAATAGTATTGTCAGTTCAACTCGGATGCCCATACTTTCATGATAGCTTTTGTTGTGTTGCCTTCATTGGTATTCTAGTCATGCTAGCTGACAACGATGGAGACCCATGTGAATGCATGGGGACTTCATTGGAAACCAATGTGGTCGAGGTCCAATTCTCTGTAGTGTTGCATTATGGGGGCTGTGGTCCAATACTGTCTGTTTGTAAGGTTGCATTCTTTTTGGCTGGAGTTGTTTTAGAAGCTAGTGAGGACGATATTTAAAAACATAAAGATGTCATTTATATACGGAATtctatatcaaatatattttgaattgatAAATTATGAGCCCGCTTGGTTCAACTTGAACAGAAtccttttttggggggtatcaaCTTATTTTCAGTaatgtttatttttctctctttttttctctttttttttttactataattTTGACCACCAATAGGCATATTGTCAAGAGTGTATTGTACTCTCATTATTGGGGACTCTCACCAGAAATGTTTAATATTTAATGTGTGGATATATGATCAGATGGACTACCTATTTTTGATCTAGTTGATATTGATCGATTTTGTCATTTATTTTGTGGTAGAGGAATGTATATAGAAAACCTAGCTATGTGGCTACTTACAGCAAGTCCCACAAACATGTTTGTTTCTTGCCATAAGAATAGTGAATGATTAACTTGTGGTTGAGAAACCCGTTAGCAGTGGATTGCATAATATTTTATATTGTTGTTCCACACACAATGTTCTGGGAAGAAAGTTCACCCCGCTGTGGAATGGTAGAGCGGAGCTTGTGAGAGCAAGGGAAAGAAGTCACTTGATGATTCAGATATCCCACTCTACACAGATGGACTCAATGTCTAGACTGAGGAGTATCTTCCAGACTCATACCCGTTTCACACAATCTTGTCAACCCAAACGGTAGTGCTGGCCGGTTCCTGGAACTATGCTTGGATGCGTAACCAGGCGAGCGCAGTGCAGCTCGGTGAACTGGTCAGTAGTGTGAAAAAGGGGTACAAGTATGTCTTGCTTTCCCCCGTTCTCAGAGCTTGTTGACCTCGGTAGATCTCCAGCTTGTTTCTTCATTGTCGTGTTTCCCTGAACTTTATTCAACTGTGCGTGGCTCTTGTACAATACAAGTGTACTACTTACAACTGCACACTGTGTAGTTGGTCTCTTTTTagtattatttttttgtgtgtgttcattttCAATGCTTTTCTGTTTCCTGATGATGTCTTCTGGAGAGCAAGagtgcattcgtaaattcagtctggAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTGGTAAATTCAGTCTGGAGTTCCAGAGTGGCCTCTGGGCGTTTTTCATTCATCTCGGAGTATTCAGGATGCACACTAGACACTCTGACCGAggagggttgatccgagcgttctgacctcacaacggtagtcaagcacccaagctaacgttggctagcttgctagctacttccagacacaaaccCCACTGAACATTTCTCGTCCTAGCAGAACTGatttaggctgttttcatgttatccagagcgttggtgactaactgctgctggaaacaattttattgcgcttttttttttgttgccgacgtttactgacaccggccatattcaacgggtgttgagcgttcgtaaattcatcagttattctgcgctctggcacagtcagacgagagtgctctgaaataggAGTAGAtcgccagagtgaatttacgaacgtgCCCCAAGTTGCCAGTAGCTGTATTACTATTTCATGAAAATCTCATTGTTCTTGAGTCTTCTTCTTGCACAGTTACCAGTCTGTTGTATATTGTAGTATGAATCTATACTGCTTTATTCCATTACATTTCTGGAAGAAAAAAACGTCATGTTTTATCTGTTAAATGTCATTAGTCACTTAGTTGTTCATATTTGAATCAATATCATTGAGGACTGTCTCTTGCAATATTTCAATATAATGTCATTAATTGAATGTCTGGAAGTATATCTGTACCTTATTGCAATAAATATATAGAAAGCA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12275 SEC62; translocation protein SEC62

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2436375 lncRNA downstream 46115 33907240 ~ 33907582 (-) True G2130806
TU2436374 lncRNA downstream 46977 33906074 ~ 33906720 (-) True G2130805
TU2436358 lncRNA downstream 77690 33875759 ~ 33876007 (-) True G2130789
TU2436356 lncRNA downstream 79197 33874192 ~ 33874500 (-) True G2130787
TU2436183 lncRNA downstream 103410 33849858 ~ 33850287 (-) True G2130642
TU2436419 lncRNA upstream 33869 34006606 ~ 34006952 (-) True G2130847
TU2436424 lncRNA upstream 42087 34014824 ~ 34015681 (-) True G2130852
TU2436426 lncRNA upstream 43561 34016298 ~ 34016990 (-) True G2130854
TU2436427 lncRNA upstream 46458 34019195 ~ 34019432 (-) True G2130855
TU2436428 lncRNA upstream 47312 34020049 ~ 34020266 (-) True G2130856
XM_036966338.1 mRNA downstream 37492 33914350 ~ 33916205 (-) True LOC118944832
XM_036966528.1 mRNA downstream 156411 33626451 ~ 33797286 (-) True LOC110508229
trnav-cac-89 mRNA downstream 371065 33582560 ~ 33582632 (-) True trnav-cac-89
XM_021589981.2 mRNA downstream 377706 33572110 ~ 33575991 (-) True LOC110509038
XM_021589980.2 mRNA downstream 377707 33572110 ~ 33575990 (-) False LOC110509038
XM_036966941.1 mRNA upstream 4839 33977576 ~ 33985115 (-) False LOC110509045
XM_021589991.2 mRNA upstream 4839 33977576 ~ 33990790 (-) True LOC110509045
XR_005040258.1 mRNA upstream 24354 33997091 ~ 33998016 (-) False LOC110509046
XM_021589993.2 mRNA upstream 24354 33997091 ~ 34000856 (-) True LOC110509046
XM_021589999.2 mRNA upstream 66051 34038788 ~ 34058344 (-) False LOC110509052
TU2435888 other downstream 554613 33398547 ~ 33399084 (-) True G2130393
TU2434271 other downstream 1723483 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 1788675 32062049 ~ 32165022 (-) False asip2b
TU2436339 other upstream 67469 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 68701 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 68832 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 71953 34044690 ~ 34058270 (-) True LOC110509052
TU2437325 other upstream 513132 34485869 ~ 34486176 (-) True G2131621

Expression Profile