RNA id: trnaw-cca-196


Basic Information

Item Value
RNA id trnaw-cca-196
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-196
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35360393 ~ 35360464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcgtggcgcaatggtagcgcgtctgactccagatcagaaggttgcgtgttcaactcacgtcgtggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2437806 lncRNA downstream 3707 35356424 ~ 35356686 (-) True G2132018
TU2437804 lncRNA downstream 25234 35334878 ~ 35335159 (-) True G2132016
TU2437798 lncRNA downstream 103319 35256687 ~ 35257074 (-) True G2132010
TU2437769 lncRNA downstream 234670 35123400 ~ 35125723 (-) True G2131990
TU2437755 lncRNA downstream 246456 35113693 ~ 35113937 (-) True G2131976
TU2437876 lncRNA upstream 25460 35385924 ~ 35386152 (-) True G2132074
TU2437885 lncRNA upstream 36553 35397017 ~ 35397255 (-) True G2132083
TU2437891 lncRNA upstream 47464 35407928 ~ 35408146 (-) True G2132089
TU2437893 lncRNA upstream 50009 35410473 ~ 35410862 (-) True G2132091
TU2437910 lncRNA upstream 87492 35447956 ~ 35448195 (-) True G2132106
trnaw-cca-195 mRNA downstream 1488 35358834 ~ 35358905 (-) True trnaw-cca-195
trnaw-cca-194 mRNA downstream 3047 35357275 ~ 35357346 (-) True trnaw-cca-194
trnaw-cca-193 mRNA downstream 4610 35355712 ~ 35355783 (-) True trnaw-cca-193
trnaw-cca-192 mRNA downstream 6169 35354153 ~ 35354224 (-) True trnaw-cca-192
trnaw-cca-191 mRNA downstream 9282 35351040 ~ 35351111 (-) True trnaw-cca-191
trnaw-cca-197 mRNA upstream 1488 35361952 ~ 35362023 (-) True trnaw-cca-197
trnaw-cca-198 mRNA upstream 3047 35363511 ~ 35363582 (-) True trnaw-cca-198
trnaw-cca-199 mRNA upstream 4606 35365070 ~ 35365141 (-) True trnaw-cca-199
trnaw-cca-200 mRNA upstream 6160 35366624 ~ 35366695 (-) True trnaw-cca-200
LOC110508240 mRNA upstream 30542 35391006 ~ 35429299 (-) True LOC110508240
TU2437347 other downstream 842264 34516522 ~ 34518129 (-) False G2131641
TU2437349 other downstream 842264 34516522 ~ 34518129 (-) True G2131641
TU2437325 other downstream 874217 34485869 ~ 34486176 (-) True G2131621
TU2436347 other downstream 1302123 34044690 ~ 34058270 (-) True LOC110509052
TU2436338 other downstream 1317828 34041569 ~ 34042565 (-) False LOC110509052
TU2438804 other upstream 645025 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other upstream 655598 36016062 ~ 36017832 (-) True lyrm4
TU2438849 other upstream 663316 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other upstream 663326 36023790 ~ 36025201 (-) True LOC118944844
TU2438948 other upstream 863749 36224213 ~ 36225379 (-) True G2132971