RNA id: XR_005040236.1


Basic Information

Item Value
RNA id XR_005040236.1
length 2189
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110509099
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36044041 ~ 36052176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCATCAATTGGTGCTTTTATGTTGAAGGCAAGAACTCTACAAACCGGTGTAACACGTGTGTAAACCGGAAGAGGTGACAAACaggattgtgggaaatgtagCAAATCTTTAGCGCAAGCAGCCTGCTGTAAGGGTAGTAGCCGCGCTAGGTGTACATCAgccggataaaaaaaaaaatcgcgGTACAATATTACCGCCAACATTATCAAAGCCTGATAATGACCTCAGCTTCATGGAGCCTCTCGTTTATTGCCGCCGTCAGTATTCTTATTGCCTGCCCAAGACCCTCTCATTCCTGGGATTCAGACATTGAGCTCTACGATCTAGTGGAGGAAATTCAACAAAACTTTTACGAATTCCTGTCTGTTGAGCAGGATGCCTCGTCAACGGACATCAGAAAGGCCTATCGCAGGCTGTCGCTCACGCTGCATCCTGACAAGAACAAAGATGCAAATGCAGAAACACAATTCAGACAGCTGGTGGGCATCTATGAAGTACTgaaagatgaagagaggagacagagGTACAATGATGTCCTGGTCAACGGGCTACCGGACTGGAGGCAGCCAGTGTTTTATTACAGGAGGGTGAGGAAGATGAGCAATGGGGAGCTGGGCTTCCTGCTCTTCCTCATCCTGACCGTGTGCCACTATGTAGTCATCTGGTCCGTCTACCTGGAGAAGCAGCTGGATGAACTTCTGAGCAAGAagaaaaaagagaagaagaaaaagacgAGTAGCAAGAGTGCCGAAGAATCGCGTTTTATCGGACAGGAAAAAATAGAGAGGTCACATGACAAACCTCATTGGCAGGATATCTTGCCACTCAAGCTGAGCACTTGGCTTTATCTCTCTGTCAAGTCCCTCCCCCATGTCATACAGGACGCCAAACAGTATTACAAAGATTATAAGGAGATGAagatcagagagaaagaggaagtggAAGCCATGGCACTGGCAGAACAGGATGCTACTACAATAAAAGAGAAACGATCCAAAGTGAAGAAGCCGAAGTTTGAGTTCCCCGTTTATGAGCCTTCCCTTACGGTCGCAGACAGCGCAAACTCACTGGCGTACGACCAGGGAACGTCTATCGAGGAGATCGAAAACCAGCTGGATGACTGGCTCGAGGATAAGAAGTCTCAGAAGAAAAAGGCTCCGGAGTGGTCAGAAGAGGACATCACTCTTCTGACAAGGAATATGGCCAAGTTCCCTGGGGGAACACCTGGACGCTGGGAGAAAATCGCCCACGAACTAGGAAGATCGGTGACCGATGTTACTGCAAAAGTCAAACAAGTCAAAGATGGTCAAACCAACACATCAGGGCTGGTGAAACTCTCTGAGCTCAAGGCCCAGGGCAGCAGCGCTTTCCCAGGAAAGGGCTCCATAGCTGGGGCCGGAGCCGTACCTGACAGCTTAATGACCCAGCGTGATGACCCCCAGCCTCCGGCAGAAGCCATGGCAGAGGGGACAGAATACAGGGGCGGAGGGGACGAAGAAGAGGGCATCCAATCCGGTGGTGTCAGGAGGAGAGGTAAAAAGACTGGGGGTGGAAGGGCGGGGGTTGAGGCTAagggacacagacagagggaCTTTGACTACACAGCTGCAGCCGAGAAGGACAGCGGAGAGGAGCAGAGTCCGCCCACCTCTTCAGTCCCACAACCGTCCAAGGAGAAGGCCACTGCGGAGACTGACGACGTCTGGACCCAGAACCAGCAGAAGCTTCTGGAGCTGGCCCTACAGCAGTACCCGCGAGGCACCACGGAACGCTGGGACTGGATCGCCAAGGTGGTCCCGGGGAAGAGAAAGGAGGAGTGTATGATCCGTTACAAACTTTTGGCTGAGCTGGTGCTGAAAAGGAAGCAGGTCAAGAGCTGACTCCGCCCAAAGACCGCCATCTTGAAATCAGTTTTCTTTTGGATCCCCCACAATGCAACATTGCAGGGACAGAAGAGGACCTGGGAGAAGGGACTAGGGCCCATCGTCTCatgtctgtcatgtgccttagcTCCGCCCAAAGCATGCCATCCAGCCTCCTCTCTATGGACTGCCATGTGAGGAGTGTTCAGCACGCCAACAAACAAAAGAAAATCAATACTTTTTTTTGCTGTGTCATTTTAAATCGCACATGTACTGAATATAACTTGTTTGAGAAGGAAATAaatggttttatttatttacatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2438864 lncRNA downstream 2215 36041534 ~ 36041826 (-) True G2132923
TU2438858 lncRNA downstream 6704 36036659 ~ 36037337 (-) True G2132917
TU2438842 lncRNA downstream 18038 36020138 ~ 36026003 (-) True G2132911
TU2438875 lncRNA upstream 25301 36077476 ~ 36077703 (-) True G2132934
TU2438969 lncRNA upstream 105053 36157228 ~ 36158288 (-) False G2132992
TU2438971 lncRNA upstream 105053 36157228 ~ 36157789 (-) True G2132992
TU2438946 lncRNA upstream 144674 36196849 ~ 36197432 (-) True G2132969
TU2438955 lncRNA upstream 182293 36234468 ~ 36243185 (-) True G2132978
XM_036966480.1 mRNA downstream 18306 36023714 ~ 36025735 (-) False LOC118944844
XM_036966844.1 mRNA downstream 26168 36016086 ~ 36017873 (-) False lyrm4
XM_021590059.2 mRNA downstream 30994 36002853 ~ 36013047 (-) False rpp40
XM_021590060.2 mRNA downstream 30994 36002853 ~ 36013047 (-) True rpp40
XM_036966073.1 mRNA downstream 118258 35870156 ~ 35925783 (-) False LOC110509091
XM_021590064.2 mRNA upstream 1243 36053418 ~ 36064572 (-) True LOC110509100
XM_036966173.1 mRNA upstream 140594 36192769 ~ 36218674 (-) False fastk
XM_021590066.2 mRNA upstream 145623 36197798 ~ 36218674 (-) True fastk
XM_036966204.1 mRNA upstream 177880 36230055 ~ 36232160 (-) False LOC118944824
XM_036966205.1 mRNA upstream 178343 36230518 ~ 36232160 (-) True LOC118944824
TU2438849 other downstream 18840 36023780 ~ 36025201 (-) False LOC118944844
TU2438850 other downstream 18840 36023790 ~ 36025201 (-) True LOC118944844
TU2438804 other downstream 26209 36005489 ~ 36017832 (-) False lyrm4
TU2438803 other downstream 26209 36016062 ~ 36017832 (-) True lyrm4
TU2437349 other downstream 1525912 34516522 ~ 34518129 (-) True G2131641
TU2438948 other upstream 172038 36224213 ~ 36225379 (-) True G2132971
TU2438933 other upstream 183340 36235515 ~ 36249775 (-) False G2132966
TU2438943 other upstream 186055 36238230 ~ 36249775 (-) True G2132966
TU2438987 other upstream 210827 36263002 ~ 36263330 (-) True G2133007
TU2439020 other upstream 504325 36556500 ~ 36557453 (-) True LOC110509111

Expression Profile